interface graph thumbnail
legend  pdf

structure nameTNA POLYMERASE BINARY COMPLEX WITH PRIMER/TEMPLATE DUPLEX
(DNA polymerase)
referenceChaput et al. 'Nat 8 1810 2017
sourceThermococcus kodakarensis
experimentX-ray (resolution=3.00, R-factor=0.238)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B; DNA polymerase family B, exonuclease do;
reference complex7om3_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKR

Estimated binding specificities ?

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# IC=2.646 IC/col=0.662 n_of_columns=4 specificity:   
A |  14   7   7   9
C |   9   1  82   7
G |  22  88   0  73
T |  51   0   7   7
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updated Sat Aug 2 09:41:29 2025