| structure name | CRYSTAL STRUCTURE OF KOD DNA POLYMERASE IN A BINARY COMPLEX WITH HYPOXANTHINE CONTAINING TEMPLATE (DNA POLYMERASE,DNA POLYMERASE,DNA POLYMERASE) |
| reference | Diederichs et al. Chembiochem 22 3060 2021 |
| source | THERMOCOCCUS KODAKARENSIS KOD1 |
| experiment | X-ray (resolution=1.92, R-factor=0.184) |
| structural superfamily | DNA/RNA polymerases;Ribonuclease H-like; |
| sequence family | DNA polymerase family B; DNA polymerase family B, exonuclease do; |
| redundant complexes | 4k8z_A
5omf_A
5vu6_A
5vu7_A
 5vu8_A
5vu9_A
6q4t_A
6wya_A
6wyb_A
7omb_A
7omg_A
7rsr_A
7rss_A
7rsu_A
7tqw_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KR |
Estimated binding specificities ?
| contact |  |
A | 7 7 7 7 C | 7 7 7 73 G | 7 73 73 7 T | 75 9 9 9scan! |
Dendrogram of similar interfaces ?
matrix format------IT------------------------------------QGQAVT--FTITSAQTIGNGSGYGFT--VAKTLTKARGRCNC L +------------3iay_A +----------1 --------------------------------DG--FA----FG----------------------------WC----KT------ ! +------------2dtu_A --3 PIPIVIIIPGFIKGRINTNTFCQGMGDARAYT--RG--WGDG--------WG---------------------------------- L ! +---------------------2xhb_A +-2 --------------------------RT----------------RC--------------LC--SCYG--FAYA----KA--RG-- L +---------------------8g9l_A |
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updated Sun Aug 3 17:25:43 2025