5vvr_ABEM : 3D-footprint complex

structure name	TERNARY COMPLEX OF RNA POL II, TRANSCRIPTION SCAFFOLD AND RAD26
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	8tvy_M
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5vvr_A interface=246,248,249,441,824,825,1379, saplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsidrnlkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrqalaikdskkrfaaiwtlcktkmvcetdvpseddptqlvsrggcgntqptirkdglklvgswkkdratgdadepelrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppppvrpsisfNeSQrgeddltfkladilkanisletlehngaphhaieeaesllqfhvatymdndiagqpqalqksgrpvksirarlkgkegrirgnlmgkrvdfsartvisgdpnleldqvgvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskragdiqlqygwkverhimdndpvlfnrqPslhkmsmmahrvkvipystfrlnlsvtspynadfdgdemnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfieldqvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspkdngmliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfstgigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrflneardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtlphfskddyspeskgfvensylrgltpqefffhamggreglidtavkTAetgyiqrrlvkaledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdllntdhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnirriiqnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrsrlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmtlntfhfagvaskkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttlksvtiaseiyydpdprstvipedeeiiqlhfslldeeaeqsfdqqspwllrleldraamndkdltmgqvgerikqtfkndlfviwsedndekliircrvvrpksldaeteaeedhmlkkientmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvpgidptriytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqggltsvtRhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtgafdvmideeslvkymp > 5vvr_B interface=487,848,849,907, fedesapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlileqlaqhttesdnisrkyeisfgkiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyeaidvpgrelkyeliaeeseddsesgkvfigrlpimlrskncylseatesdlyklkecpfdmggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekgsrfistlqvklygregssartikatlpyikqdipiviifralgiipdgeilehicydvndwqmlemlkpcvedgfviqdretaldfigrrgtalgikkekriqyakdilqkeflphitqlegfesrkafflgyminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtveeahdfnmklainaktitsglkyalatgnwgeqkkamssragvsqvlnrytysstlshlrrtntpigRdgklakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitflsewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdirekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdieggfedveeytwssllneglveyidaeeeesiliamqpedlepaeaneendldvdpakrirvshhattfthceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyypqkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsymdqekKYgmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsgedviigkttpispdeeElgqrtayhskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdkfasrhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsgnegdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmvddkiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafrvhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytdrsrdf > 5vvr_E interface= mdqenernisrlwrafrtvkemvkdrgyfitqeevelpledfkakycdsmgrpqrkmmsfqanpteesiskfpdmgslwvefcdepsvgvktmktfvihiqeknfqtgifvyqnnitpsamklvpsippatietfneaalvvnithhelvpkhirlssdekrellkryrlkesqlpriqradpvalylglkrgevvkiirksetsgryasyricm > 5vvr_M interface=195,332,333,334,336,337,340,437,457,458,497, lrfrgqpgeakddgdelyyqerlkkwvkqrscgsqrssdlpewrrphpnipdaklnsqfkipgeiysllfnyqktcvqwlyelyqqncggiigdemglgktiqviafiaalhhsglltgpvlivcpatvmkqwcnefqhwwpplrtvilhsmgsgmasdqhilittyvglrihsdkllkvkwqyavldeghkirNpdseisltckklkthnriilsgtpiqnnltelwslfdfifpgklgtlpvfqqqfvipiniggyanatniqvqtgykcavalrdlispyllrrvkadvakdlpqkkemvlfckltkyqrskyleflhssdlnqiqngKRNvLFgiDilrkicnhpdgdpkrsgkmqvvkqllllwhkqgykallftqsrqmldileefistkdpdlshlnylrmdgttnikgrqslvdrfnnesfdvfllttRvgglgvnltganriiifdpDWnpstdmqarerawrigqkrevsiyrlmvggsieekiyhRqifkqf
interface signature	NSQPTAR/RKYE//NKRNLFDRDWR

Estimated binding specificities ?

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# IC=9.764 IC/col=0.542 n_of_columns=18

specificity:

A |  13  96   0   0   0   0  24  24  24  24  24  24  24  24  24  16  96   0
C |  16   0   0   0   0  96  24  24  24  24  24  24  24  24  24  54   0   0
G |  13   0   0   0   0   0  24  24  24  24  24  24  24  24  24  13   0  96
T |  54   0  96  96  96   0  24  24  24  24  24  24  24  24  24  13   0   0

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updated Mon Jan 5 22:47:59 2026