5vxn_CD : 3D-footprint complex

structure name	STRUCTURE OF TWO RCSB DIMERS BOUND TO TWO PARALLEL DNAS.
reference	Center for Structural Genomics of Infectious Diseases (CSGID)
source	Escherichia coli (strain K12) / Escherichia coli (strain K12) / Escherichia coli (strain K12) / Escherichia coli (strain K12)
experiment	X-ray (resolution=3.38, R-factor=?)
structural superfamily	CheY-like;C-terminal effector domain of the bipartite response regulators;
reference complex	5w43_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5vxn_C interface=173,174,175,177,178,179, nnmnviiaddhpivlfgirksleqiewvnvvgefedstalinnlpkldahvlitdlsmpgdkygdgitlikyikrhfpslsiivltmnnnpailsavldldiegivlkqgaptdlpkalaalqkgkkftpesvsrllekisakrlspkesevlrlfaegflvteiakklnrsIKTiSSQkksammklgvendiallnylssvt > 5vxn_D interface=168,169,170,172,173,174, nmnviiaddhpivlfgirksleqiewvnvvgefedstalinnlpkldahvlitdlsmpgdkygdgitlikyikrhfpslsiivltmnnnpailsavldldiegivlkqgaptdlpkalaalqkgkkesvsrllekidkrlspkesevlrlfaegflvteiakklnrsIKTiSSQkksammklgvendiallnylssv
interface signature	IKTSSQ/IKTSSQ

Estimated binding specificities ?

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# IC=10.669 IC/col=0.762 n_of_columns=14

specificity:

A |   9  96   9   0  96  24  24  24  24   0   0   0   0  67
C |   9   0  11   0   0  24  24  24  24   0  96   0   0   9
G |   9   0  67  96   0  24  24  24  24   0   0   0   0  11
T |  69   0   9   0   0  24  24  24  24  96   0  96  96   9

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updated Tue Sep 10 09:19:19 2024