5w43_AB : 3D-footprint complex

structure name	STRUCTURE OF THE TWO-COMPONENT RESPONSE REGULATOR RCSB-DNA COMPLEX
reference	Center for Structural Genomics of Infectious Diseases (CSGID)
source	Escherichia coli str. K-12 substr. MG1655
experiment	X-ray (resolution=3.15, R-factor=?)
structural superfamily	CheY-like;C-terminal effector domain of the bipartite response regulators;
reference complex	5w43_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5w43_A interface=172,173,174,176,177,178, nnmnviiaddhpivlfgirksleqiewvnvvgefedstalinnlpkldahvlitdlsmpgdkygdgitlikyikrhfpslsiivltmnnnpailsavldldiegivlkqgaptdlpkalaalqkgkkftpesvsrllekidkrlspkesevlrlfaegflvteiakklnrsIKTiSSQkksammklgvendiallnylssvt > 5w43_B interface=166,167,168,170,171,172, nnmnviiaddhpivlfgirksleqiewvnvvgefedstalinnlpkldahvlitdlsmpgdkygdgitlikyikrhfpslsiivltmnnnpailsavldldiegivlkqgaptdlpkalaalqkpesvsrllekikrlspkesevlrlfaegflvteiakklnrsIKTiSSQkksammklgvendiallnylss
interface signature	IKTSSQ/IKTSSQ

Estimated binding specificities ?

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# IC=4.995 IC/col=0.357 n_of_columns=14

specificity:

A |  13  38   8   2  74  34  24  24  27   8   6   8  12  69
C |  13  20   7   2   7  22  24  24  25  10  78   8  12   9
G |  13  19  74  88   8  20  24  24  22   8   6   8  12   9
T |  57  19   7   4   7  20  24  24  22  70   6  72  60   9

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updated Tue Sep 10 09:19:57 2024