5x11_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF BACILLUS SUBTILIS PADR IN COMPLEX WITH OPERATOR DNA
reference	Park et al. 'Nucleic 45 13080 2017
source	Bacillus subtilis subsp. spizizenii strain W23
experiment	X-ray (resolution=2.65, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5x11_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x11_A interface=23,40,41,42,43,45,46,68, kdpmrvlkyailgllrkgelsgYditsyfkeelgqfwsaKHSQiYPelkkltdegfitfrttiqgtkLekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfissrqeasdlftdqllkrkaklsdlqgsyeklmaspmsfsspdfghylvltkalereknyvswlesilami > 5x11_B interface=22,39,40,41,42,44,45,67, dpmrvlkyailgllrkgelsgYditsyfkeelgqfwsaKHSQiYPelkkltdegfitfrttiqgtkLekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeasdlftdqllkrkaklsdlqgsyeklmasmsfsspdfghylvltkalereknyvswlesilamid
interface signature	YKHSQYPL/YKHSQYPL

Estimated binding specificities ?

readout + contact

# IC=15.787 IC/col=0.877 n_of_columns=18

specificity:

A |   2  51   0   0   2  96  90  10  24  24  24   0   0  96   0  96   5   2
C |  93  20   0   0   0   0   2  64  24  24  24  12   0   0  96   0  11   1
G |   1  15   0  96   1   0   2  12  24  24  24   2   0   0   0   0  18  93
T |   0  10  96   0  93   0   2  10  24  24  24  82  96   0   0   0  62   0

scan!

home
updated Tue Sep 10 09:36:08 2024