interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF BACILLUS SUBTILIS PADR IN COMPLEX WITH OPERATOR DNA
(Transcriptional regulator)
referencePark et al. 'Nucleic 45 13080 2017
sourceBacillus subtilis subsp. spizizenii strain W23
experimentX-ray (resolution=2.65, R-factor=0.230)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyTranscriptional regulator PadRlike family;
multimeric complexes5x11_AB 5x11_CD 5x11_EFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureYKHSQYPL

Estimated binding specificities ?

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# IC=8.008 IC/col=1.001 n_of_columns=8 specificity:   
A |   9  57   0   0   0  96  96  59
C |  78  11   0   0   0   0   0   9
G |   0   9   0  96   0   0   0   9
T |   9  19  96   0  96   0   0  19
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --------------NASTRGHT--STLT------   L                         +-------7cby_C    
                                                     +-----------1 
  RT--LANTHGTTETYTRG----------------   L   +---------2           +-------1f4k_B    
                                           !         ! 
  --TT------KATTQTTG--LTRT----KAFTYT   L --3         +-------------------2p7c_B    
                                           ! 
  --------------------YG------------       +-----------------------------3eyi_B    
                                         

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updated Fri Sep 13 20:53:22 2024