5x11_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF BACILLUS SUBTILIS PADR IN COMPLEX WITH OPERATOR DNA
reference	Park et al. 'Nucleic 45 13080 2017
source	Bacillus subtilis subsp. spizizenii strain W23
experiment	X-ray (resolution=2.65, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x11_C interface=19,37,38,41,64, rvlkyailgllrkgelsgYditsyfkeelgqfwsakHSqiYpelkkltdegfitfrttiqgtkLekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeasdlftdqllkrkaklsdlqgsyeklmapmsfsspdfghylvltkalereknyvswlesilamid > 5x11_D interface=19,37,38,41,64, rvlkyailgllrkgelsgYditsyfkeelgqfwsakHSqiYpelkkltdegfitfrttiqgtkLekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeasdlftdqllkrkaklsdlqgsyeklmaspmsfsspdfghylvltkalereknyvswlesilamid
interface signature	YHSYL/YHSYL

Estimated binding specificities ?

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# IC=11.850 IC/col=0.658 n_of_columns=18

specificity:

A |   0  56   0   0  91  13  24  24  24  24  24  61  82   4   0  96  24   0
C |  96  13   0   0   1   8  24  24  24  24  24   8   4   4  96   0  24   0
G |   0  13   0  96   4  10  24  24  24  24  24  14   6   1   0   0  24  96
T |   0  14  96   0   0  65  24  24  24  24  24  13   4  87   0   0  24   0

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updated Sat Dec 14 08:09:43 2024