5x11_EFGH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF BACILLUS SUBTILIS PADR IN COMPLEX WITH OPERATOR DNA
reference	Park et al. 'Nucleic 45 13080 2017
source	Bacillus subtilis subsp. spizizenii strain W23
experiment	X-ray (resolution=2.65, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5x11_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x11_E interface=22,39,40,41,42,44,45,67, dpmrvlkyailgllrkgelsgYditsyfkeelgqfwsaKHSQiYPelkkltdegfitfrttiqgtkLekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeasdlftdqllkrkaklsdlqgsyeklmasaepmsfsspdfghylvltkalereknyvswlesilami > 5x11_F interface=21,38,39,40,41,43,66, pmrvlkyailgllrkgelsgYditsyfkeelgqfwsaKHSQiYpelkkltdegfitfrttiqgtkLekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeasdlftdqllkrkaklsdlqgsyeklmapmsfsspdfghylvltkalereknyvswlesilamid > 5x11_G interface= pmrvlkyailgllrkgelsgYditsyfkeelgqfwsaKHSQiYpelkkltdegfitfrttiqgtkLekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfisssrqeasdlftdqllkrkaklsdlqgsyeklmasaepmsfsspdfghylvltkalereknyvswlesila > 5x11_H interface=19,37,38,39,41,42,64, rvlkyailgllrkgelsgYditsyfkeelgqfwsakHSQiYPelkkltdegfitfrttiqgtkLekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeasdlftdqllkrkaklsdlqgsyeklmsfsspdfghylvltkalereknyvswlesilamid
interface signature	YKHSQYPL/YKHSQYL/YKHSQYL/YHSQYPL

Estimated binding specificities ?

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# IC=16.825 IC/col=0.841 n_of_columns=20

specificity:

A |   0  24   0   0   8  96  87   5  24  24  24   5   0  89   0  96   0   0   8   0
C |  84  24   0   0   8   0   2  78  24  24  24   5   0   5  96   0   0   0   8  75
G |   4  24   0  96  11   0   5   8  24  24  24   8   0   0   0   0   0  96   5   1
T |   8  24  96   0  69   0   2   5  24  24  24  78  96   2   0   0  96   0  75  20

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updated Tue Sep 10 09:36:58 2024