5x5l_AE : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF RESPONSE REGULATOR ADER DNA BINDING DOMAIN IN COMPLEX WITH AN INTERCISTRONIC REGION
reference	'Nucleic 45 9773 2017 X-RAY DIFFRACTION
source	ACINETOBACTER BAUMANNII
experiment	X-ray (resolution=2.75, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x5l_A interface=60,61,63,64,65,67,68,86, klyknieidtdthsvyihkillnltlteykiisfmidqphkvftrgelmnhcmnsdaleRTvDSHvSKlrkkleeqgifqmlinvRgvgyrldnp > 5x5l_E interface=64,65,67,68,69,71,72,90, nklyknieidtdthsvyihenkkillnltlteykiisfmidqphkvftrgelmnhcmnsdaleRTvDSHvSKlrkkleeqgifqmlinvRgvgyrldn
interface signature	RTDSHSKR/RTDSHSKR

Estimated binding specificities ?

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# IC=14.050 IC/col=0.703 n_of_columns=20

specificity:

A |   0   0  24   6  86   0   6   0  24  24  24   0   0  96  10  80  24  24   0   0
C |  94  96  24  54   6  94  18   0  24  24  24  96  96   0  66   8  24  24   0  10
G |   0   0  24  18   2   2  18   0  24  24  24   0   0   0  10   0  24  24   0   2
T |   2   0  24  18   2   0  54  96  24  24  24   0   0   0  10   8  24  24  96  84

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updated Sat Dec 14 08:15:26 2024