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legend  pdf

structure nameCRYSTAL STRUCTURE OF RESPONSE REGULATOR ADER DNA BINDING DOMAIN IN COMPLEX WITH AN INTERCISTRONIC REGION
(ADER)
reference'Nucleic 45 9773 2017 X-RAY DIFFRACTION
sourceACINETOBACTER BAUMANNII
experimentX-ray (resolution=2.75, R-factor=0.279)
structural superfamilyC-terminal effector domain of the bipartite response regulators;
sequence familyTranscriptional regulatory protein, C ter;
multimeric complexes5x5l_AE 5x5l_BH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRTDSSKR

Estimated binding specificities ?

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# IC=7.388 IC/col=0.821 n_of_columns=9 specificity:   
A |  15   0  96   5  96   5  24   6   5
C |  65  96   0  80   0  81  24   5   5
G |   6   0   0   5   0   5  24   5   6
T |  10   0   0   6   0   5  24  80  80
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --RGTC--DCVA----RGRC--RC   L         +-----------------------------8hih_Q    
                                     +-1 
  ----HT----RTITYT--------   L     +-2 +-----------------------------4kfc_B    
                                   ! ! 
  --ST--TAQC----ST--------       +-3 +-----------------------------8b4b_W    
                                 ! ! 
  ------KGTG--KANGYA--ST--   L --4 +-----------------------------1zlk_A    
                                 ! 
  LGTA--KGTA----HTRG------   L   +-----------------------------6jhe_A    
                               

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updated Sun Aug 3 10:27:21 2025