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legend  pdf

structure nameCRYSTAL STRUCTURE OF RESPONSE REGULATOR ADER DNA BINDING DOMAIN IN COMPLEX WITH AN INTERCISTRONIC REGION
(ADER)
reference'Nucleic 45 9773 2017 X-RAY DIFFRACTION
sourceACINETOBACTER BAUMANNII
experimentX-ray (resolution=2.75, R-factor=0.279)
structural superfamilyC-terminal effector domain of the bipartite response regulators;
sequence familyTranscriptional regulatory protein, C ter;
multimeric complexes5x5l_AE 5x5l_BH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRTDSSKR

Estimated binding specificities ?

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# IC=7.483 IC/col=0.831 n_of_columns=9 specificity:   
A |  79  81  24   5   0   7   0   0   5
C |   7   5  24   7   0   5   0   0   5
G |   5   5  24  79   0  79   0  96  73
T |   5   5  24   5  96   5  96   0  13
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --RGTC--DCVA----RGRC------RC   L                            +----------8hih_Q    
                                           +------------------1 
  ----------------RC----YGKT--           +-2                  +----------2acj_B    
                                         ! ! 
  ----HT----RTITYT------------   L     +-3 +-----------------------------4kfc_B    
                                       ! ! 
  --ST--TAQC----ST------------       +-4 +-----------------------------8b4b_W    
                                     ! ! 
  ------KGTG--KANGYA--ST------   L --5 +-----------------------------1zlk_A    
                                     ! 
  LGTA--KGTA----HTRG----------   L   +-----------------------------6jhe_A    
                                   

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updated Sat Jan 10 09:22:09 2026