5x6d_GH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PRFA-DNA BINARY COMPLEX
reference	Zhu et al. 'Protein 8 308 2017
source	Listeria monocytogenes
experiment	X-ray (resolution=2.94, R-factor=?)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	5lej_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x6d_G interface=180,182,183,186, aqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvsRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln > 5x6d_H interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln
interface signature	HSAR/HSASR

Estimated binding specificities ?

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# IC=7.115 IC/col=0.712 n_of_columns=10

specificity:

A |  75  80   0  81  24  24   0   5   0   6
C |   5   6  96   5  24  24   0   5   5   5
G |  10   5   0   5  24  24   0  76   5   5
T |   6   5   0   5  24  24  96  10  86  80

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updated Tue Sep 10 09:41:13 2024