5x6d_GH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PRFA-DNA BINARY COMPLEX
reference	Zhu et al. 'Protein 8 308 2017
source	Listeria monocytogenes
experiment	X-ray (resolution=2.94, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x6d_G interface=180,182,183,186, aqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvsRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln > 5x6d_H interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln
interface signature	HSAR/HSASR

Estimated binding specificities ?

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# IC=7.183 IC/col=0.718 n_of_columns=10

specificity:

A |  80  81   0  80  24  24   0   5   0   5
C |   5   5  96   6  24  24   0   7   5   5
G |   6   5   0   5  24  24   0  74   6   5
T |   5   5   0   5  24  24  96  10  85  81

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updated Sat Dec 14 08:15:38 2024