5x6d_GH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PRFA-DNA BINARY COMPLEX
reference	Zhu et al. 'Protein 8 308 2017
source	Listeria monocytogenes
experiment	X-ray (resolution=2.94, R-factor=?)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	5lej_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x6d_G interface=180,182,183,186, aqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvsRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln > 5x6d_H interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln
interface signature	HSAR/HSASR

Estimated binding specificities ?

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# IC=7.141 IC/col=0.714 n_of_columns=10

specificity:

A |  80  85   5  96  24  24   5   0   5   5
C |   5   6  80   0  24  24   5   0   6  12
G |   5   5   5   0  24  24   6  96   5   5
T |   6   0   6   0  24  24  80   0  80  74

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updated Wed Jul 30 13:43:30 2025