5x6d_MN : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PRFA-DNA BINARY COMPLEX
reference	Zhu et al. 'Protein 8 308 2017
source	Listeria monocytogenes
experiment	X-ray (resolution=2.94, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x6d_M interface=180,181,182,183,185,186, aqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHSSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln > 5x6d_N interface=181,182,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHSSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln
interface signature	HSSASR/HSSASR

Estimated binding specificities ?

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# IC=12.360 IC/col=0.883 n_of_columns=14

specificity:

A |   3   3  96  96   3  84  24  24   0   0   0   6  79  70
C |   3   3   0   0  84   3  24  24   0   0   0   3   7  11
G |   3   3   0   0   3   6  24  24   0  96   0   3   3   8
T |  87  87   0   0   6   3  24  24  96   0  96  84   7   7

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updated Sat Dec 14 08:16:08 2024