5x6d_MN : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PRFA-DNA BINARY COMPLEX
reference	Zhu et al. 'Protein 8 308 2017
source	Listeria monocytogenes
experiment	X-ray (resolution=2.94, R-factor=?)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	5lej_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x6d_M interface=180,181,182,183,185,186, aqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHSSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln > 5x6d_N interface=181,182,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHSSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln
interface signature	HSSASR/HSSASR

Estimated binding specificities ?

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# IC=12.514 IC/col=0.894 n_of_columns=14

specificity:

A |   3   3  96  96   3  87  24  24   0   0   0   3  78  69
C |   3   3   0   0  87   3  24  24   0   0   0   3   4  10
G |   5   3   0   0   3   3  24  24   0  96   0   3   7  10
T |  85  87   0   0   3   3  24  24  96   0  96  87   7   7

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updated Tue Sep 10 09:41:35 2024