5x6d_MN : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PRFA-DNA BINARY COMPLEX
reference	Zhu et al. 'Protein 8 308 2017
source	Listeria monocytogenes
experiment	X-ray (resolution=2.94, R-factor=?)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	5lej_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x6d_M interface=180,181,182,183,185,186, aqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHSSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln > 5x6d_N interface=181,182,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHSSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln
interface signature	HSSASR/HSSASR

Estimated binding specificities ?

readout + contact

# IC=12.265 IC/col=0.876 n_of_columns=14

specificity:

A |   3   5  96  96   3  85  24  24   0   0   0   5  78  69
C |   3   3   0   0  85   3  24  24   0   0   0   3   4  10
G |   5   3   0   0   3   3  24  24   0  96   0   3   7   7
T |  85  85   0   0   5   5  24  24  96   0  96  85   7  10

scan!

home
updated Wed Jul 30 13:44:00 2025