5x6e_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PRFA-DNA BINARY COMPLEX
reference	Zhu et al. 'Protein 8 308 2017
source	Listeria monocytogenes
experiment	X-ray (resolution=2.99, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x6e_E interface=181,182,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHSSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln > 5x6e_F interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln
interface signature	HSSASR/HSASR

Estimated binding specificities ?

readout + contact

# IC=7.415 IC/col=0.742 n_of_columns=10

specificity:

A |  75  89  20  68  24  24   6   0   0   0
C |  13   0  64   6  24  24  13   0   0   0
G |   0   7   6  13  24  24   0  96   0   0
T |   8   0   6   9  24  24  77   0  96  96

scan!

home
updated Sat Dec 14 08:16:37 2024