5x6e_MN : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PRFA-DNA BINARY COMPLEX
reference	Zhu et al. 'Protein 8 308 2017
source	Listeria monocytogenes
experiment	X-ray (resolution=2.99, R-factor=?)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	5lej_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x6e_M interface=181,182,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHSSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln > 5x6e_N interface=170,181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltMqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln
interface signature	HSSASR/MHSASR

Estimated binding specificities ?

readout + contact

# IC=11.271 IC/col=0.867 n_of_columns=13

specificity:

A |  12  89  96   0  96  24  24   0   0   0   0  51  66
C |  12   0   0  96   0  24  24   0   0   0   0  21  12
G |  15   6   0   0   0  24  24   0  96   0   0  12   6
T |  57   1   0   0   0  24  24  96   0  96  96  12  12

scan!

home
updated Mon Jan 5 23:21:36 2026