5x6g_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SMAD5-MH1/PALINDROMIC SBE DNA COMPLEX
reference	Wang et al. 'Nucleic 43 9051 2015
source	Mus musculus
experiment	X-ray (resolution=3.05, R-factor=?)
structural superfamily	SMAD MH1 domain;
reference complex	6fzs_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x6g_A interface=65,67,70,72, tspavkrllgwkqgdeeekwaekavdalvkklkkkkgameelekalsspgqpskcvtiprsldgRlQvsHrKglphviycrvwrwpdlqshhelkpldicefpfgskqkevcinpyhykrve > 5x6g_B interface=65,67,72, tspavkrllgwkqgdeeekwaekavdalvkklkkkkgameelekalsspgqpskcvtiprsldgRlQvshrKglphviycrvwrwpdlqshhelkpldicefpfgskqkevcinpyhykrves
interface signature	RQHK/RQK

Estimated binding specificities ?

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# IC=10.028 IC/col=1.003 n_of_columns=10

specificity:

A |   6   0   6   0   0  96   6  72   0   6
C |   6   0  12  96   0   0   6   6  96   0
G |   6  96   6   0   0   0  78  12   0   6
T |  78   0  72   0  96   0   6   6   0  84

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updated Tue Sep 10 09:42:40 2024