5x6m_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SMAD5-MH1 IN COMPLEX WITH A COMPOSITE DNA SEQUENCE
reference	Wang et al. 'Nucleic 43 9051 2015
source	Mus musculus
experiment	X-ray (resolution=3.20, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x6m_E interface=61,63,65,70, pavkrllgwkqgdeeekwaekavdalvkklkkkkgameelekalsspgqpskcvtiprslDgRlQvshrKglphviycrvwrwpdlqshhelkpldicefpfgskqkevcinpyhykrves > 5x6m_F interface=61,63,65,70, pavkrllgwkqgdeeekwaekavdalvkklkkkkgameelekalsspgqpskcvtiprslDgRlQvshrKglphviycrvwrwpdlqshhelkpldicefpfgskqkevcinpyhykrves
interface signature	DRQK/DRQK

Estimated binding specificities ?

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# IC=9.167 IC/col=0.764 n_of_columns=12

specificity:

A |  96   0  88   0  24  24  24   8   0   8   8  88
C |   0   0   0  96  24  24  24  64   0  16  88   0
G |   0  96   8   0  24  24  24  16  96  16   0   8
T |   0   0   0   0  24  24  24   8   0  56   0   0

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updated Sat Dec 14 08:18:03 2024