5xh6_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE ACIDAMINOCOCCUS SP. BV3L6 CPF1 RVR VARIANT IN COMPLEX WITH CRRNA AND TARGET DNA (TATA PAM) (CRISPR-associated endonuclease Cpf1)
reference	Nishimasu et al. 'Mol. 67 139 2017
source	Acidaminococcus sp. (strain BV3L6) / Acidaminococcus sp. (strain BV3L6)
experiment	X-ray (resolution=2.00, R-factor=0.177)
redundant complexes	5b43 5kk5 5xh7
reference complex	8sfh_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xh6_A interface=167,538,547,551,598,602,603,606,783, mtqfegftnlyqvsktlrfelipqgktlkhiqeqgfieedkarndhykelkpiidriyktyadqclqlvqldwenlsaaidsyrkekteetrnalieeqatyrnaihdyfigrtdnltdainkrhaeiykglfkaelfngkvlkqlgtvtttehenallrsfdkftTyfsgfyenrknvfsaedistaiphrivqdnfpkfkenchiftrlitavpslrefenvkkaigifvstsieevfsfpfynqlltqtqidlynqllggisreagtekikglnevlnlaiqkndetahiiaslphrfiplfkqilsdrntlsfileefksdeeviqsfckyktllrnenvletaealfnelnsidlthifishkkletissalcdhwdtlrnalyerriseltgkitksakekvqrslkhedinlqeiisaagkelseafkqktseilshahaaldqplpttlkkqeekeilksqldsllglyhlldwfavdesnevdpefsarltgiklemepslsfynkarnyatkkpysvekfklnfqmpTlargwdvnVeknRgailfvknglyylgimpkqkgrykalsfeptektsegfdkmyydyfPdaaKMipKcstqlkavtahfqthttpillsnnfiepleitkeiydlnnpekepkkfqtayakktgdqkgyrealckwidftrdflskytkttsidlsslrpssqykdlgeyyaelnpllyhisfqriaekeimdavetgklylfqiynkdfakghhgkpnlhtlywtglfspenlaktsiklngQaelfyrpksrmmahrlgekmlnkklkdqktpipdtlyqelydyvnhrlshdlsdearallpnvitkevsheiikdrrftsdkfffhvpitlnyqaanspskfnqrvnaylkehpetpiigidrgernliyitvidstgkileqrslntiqqfdyqkkldnrekervaarqawsvvgtikdlkqgylsqviheivdlmihyqavvvlenlnfavyqqfekmlidklnclvlkdypaekvggvlnpyqltdqftsfakmgtqsgflfyvpapytskidpltgfvdpfvwktiknhesrkhflegfdflhydvktgdfilhfkmnrnlsfqrglpgfmpawdivfeknetqfdakgtpfiagkrivpyrdlypanelialleekgivfrdgsnilpkllenddshaidtmvalirsvlqmrnsnaatgedyinspvrdlngvcfdsrfqnpewpmdadangayhialkgqlllnhlkeskdlklqngisnqdwlayiqelrn
interface signature	TTVRPKMKQ

Estimated binding specificities ?

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# IC=3.224 IC/col=0.806 n_of_columns=4

specificity:

A |  19  84   4  96
C |  19   4   2   0
G |  20   4   2   0
T |  38   4  88   0

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updated Fri Jan 9 04:51:34 2026