5xh6_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE ACIDAMINOCOCCUS SP. BV3L6 CPF1 RVR VARIANT IN COMPLEX WITH CRRNA AND TARGET DNA (TATA PAM) (CRISPR-associated endonuclease Cpf1)
reference	Nishimasu et al. 'Mol. 67 139 2017
source	Acidaminococcus sp. (strain BV3L6) / Acidaminococcus sp. (strain BV3L6)
experiment	X-ray (resolution=2.00, R-factor=0.177)
redundant complexes	5b43 5kk5 5xh7
reference complex	8sfh_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xh6_A interface=167,538,547,551,598,602,603,606,783, mtqfegftnlyqvsktlrfelipqgktlkhiqeqgfieedkarndhykelkpiidriyktyadqclqlvqldwenlsaaidsyrkekteetrnalieeqatyrnaihdyfigrtdnltdainkrhaeiykglfkaelfngkvlkqlgtvtttehenallrsfdkftTyfsgfyenrknvfsaedistaiphrivqdnfpkfkenchiftrlitavpslrefenvkkaigifvstsieevfsfpfynqlltqtqidlynqllggisreagtekikglnevlnlaiqkndetahiiaslphrfiplfkqilsdrntlsfileefksdeeviqsfckyktllrnenvletaealfnelnsidlthifishkkletissalcdhwdtlrnalyerriseltgkitksakekvqrslkhedinlqeiisaagkelseafkqktseilshahaaldqplpttlkkqeekeilksqldsllglyhlldwfavdesnevdpefsarltgiklemepslsfynkarnyatkkpysvekfklnfqmpTlargwdvnVeknRgailfvknglyylgimpkqkgrykalsfeptektsegfdkmyydyfPdaaKMipKcstqlkavtahfqthttpillsnnfiepleitkeiydlnnpekepkkfqtayakktgdqkgyrealckwidftrdflskytkttsidlsslrpssqykdlgeyyaelnpllyhisfqriaekeimdavetgklylfqiynkdfakghhgkpnlhtlywtglfspenlaktsiklngQaelfyrpksrmmahrlgekmlnkklkdqktpipdtlyqelydyvnhrlshdlsdearallpnvitkevsheiikdrrftsdkfffhvpitlnyqaanspskfnqrvnaylkehpetpiigidrgernliyitvidstgkileqrslntiqqfdyqkkldnrekervaarqawsvvgtikdlkqgylsqviheivdlmihyqavvvlenlnfavyqqfekmlidklnclvlkdypaekvggvlnpyqltdqftsfakmgtqsgflfyvpapytskidpltgfvdpfvwktiknhesrkhflegfdflhydvktgdfilhfkmnrnlsfqrglpgfmpawdivfeknetqfdakgtpfiagkrivpyrdlypanelialleekgivfrdgsnilpkllenddshaidtmvalirsvlqmrnsnaatgedyinspvrdlngvcfdsrfqnpewpmdadangayhialkgqlllnhlkeskdlklqngisnqdwlayiqelrn
interface signature	TTVRPKMKQ

Estimated binding specificities ?

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# IC=3.562 IC/col=0.890 n_of_columns=4

specificity:

A |   0  76   0  39
C |   0   0   0  19
G |   0  20   0  19
T |  96   0  96  19

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updated Thu Sep 12 22:21:03 2024