5xus_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF LACHNOSPIRACEAE BACTERIUM ND2006 CPF1 IN COMPLEX WITH CRRNA AND TARGET DNA (TTTA PAM) (LBCPF1)
reference	Nishimasu et al. 'Mol. 67 633 2017
source	LACHNOSPIRACEAE BACTERIUM ND2006
experiment	X-ray (resolution=2.50, R-factor=0.181)
reference complex	5xut_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xus_A interface=150,525,534,537,538,583,587,588,591, hmsklekftncyslsktlrfkaipvgktqenidnkrllvedekraedykgvkklldryylsfindvlhsiklknlnnyislfrkktrtekenkelenleinlrkeiakafkgnegykslfkkdiietilpeflddkdeialvnsfngftTaftgffdnrenmfseeakstsiafrcinenltryisnmdifekvdaifdkhevqeikekilnsdydvedffegeffnfvltqegidvynaiiggfvtesgekikglneyinlynqktkqklpkfkplykqvlsdreslsfygegytsdeevlevfrntlnknseifssikkleklfknfdeyssagifvkngpaistiskdifgewnvirdkwnaeyddihlvtekyeddrrksfkkigsfsleqlqeyadadlsvveklkeiiiqkvdeiykvygsseklfdadfvlekslkkndavvaimkdlldsvksfenyikaffgegketnrdesfygdfvlaydillkvdhiydairnyvtqkpyskdkfklyfqnpQfmggwdkdKetDYratilrygskyylaimdkkyakclqkidkddvngnyekinykllPgpnKMlpKvffskkwmayynpsediqkiykngtfkkgdmfnlndchklidffkdsisrypkwsnaydfnfsetekykdiagfyreveeqgykvsfesaskkevdklveegklymfqiynkdfsdkshgtpnlhtmyfkllfdennhgqirlsggaelfmrraslkkeelvvhpanspianknpdnpkktttlsydvykdkrfsedqyelhipiainkcpknifkintevrvllkhddnpyvigidrgernllyivvvdgkgniveqyslneiinnfngiriktdyhslldkkekerfearqnwtsienikelkagyisqvvhkicelvekydavialedlnvkvekqvyqkfekmlidklnymvdkksnpcatggalkgyqitnkfesfksmstqngfifyipawltskidpstgfvnllktkytsiadskkfissfdrimyvpeedlfefaldyknfsrtdadyikkwklysygnririfdweevcltsaykelfnkyginyqqgdirallceqsdkafyssfmalmslmlqmrnsitgrtdvdflispvknsdgifydsrnyeaqenailpknadangayniarkvlwaigqfkkaedekldkvkiaisnkewleyaqtsv
interface signature	TQKDYPKMK

Estimated binding specificities ?

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# IC=6.354 IC/col=0.706 n_of_columns=9

specificity:

A |   8  16  24  24  16   0   0   0  96
C |  56  16  24  24  64   0   0   0   0
G |  16  56  24  24  16   0   0   0   0
T |  16   8  24  24   0  96  96  96   0

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updated Thu Sep 12 22:24:43 2024