5xvo_BDE : 3D-footprint complex

structure name	E. FAE CAS1-CAS2/PRESPACER/TARGET TERNARY COMPLEX REVEALING DNA SAMPLING AND HALF-INTEGRATION STATES
reference	Nam et al. Nature 550 137 2017
source	ENTEROCOCCUS FAECALIS TX0027
experiment	X-ray (resolution=3.10, R-factor=?)
reference complex	5xvp_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xvo_B interface=146,150,153,206,207,208, mgwrtvvvnkhsklsyknnhlvfkaidhqelihlseidvlllettdislttmllkrlidekilvlfcddkrlpigkilpfygrhdsslqltrqlawteerkgqvwtaiiaqkitnqslhlaqrdygqkaaallamraelrlfdpaNregHaaRsyfntlfgndftreqendinaglnygytlllsifarelvqtgcftqlglkhaNQFndfnlasdlmepfrplvdqiiyenrkeafpimkrklfalfmntymykkkqmfltniatdytkhvvkvlnqeeegvpefgi > 5xvo_D interface= gwrtvvvnkhsklsyknnhlvfkaidhqelihlseidvlllettdislttmllkrlidekilvlfcddkrlpigkilpfygrhdsslqltrqlawteerkgqvwtaiiaqkitnqslhlaqrdygqkaaallamraelrlfdpanReghAarSyfntlfgndftreqendinaglnygytlllsifarelvqtgcftqlglkhanQFNdfnlasdlmepfrplvdqiiyenrkeafpimkrklfalfmntymykkkqmfltniatdytkhvvkvlnqeeegvpefgi > 5xvo_E interface=2,49,50,51,54, yRymrlllmfdmptdtasdrkayrkfrkflinegfimhqfsvyskillNDTanKamlarlkqnnpqrglitllnvtekqfsrmiylhgeqdnrvansderivflge
interface signature	NHRNQF/RASQFN/RNDTK

Estimated binding specificities ?

readout + contact

# IC=10.269 IC/col=0.571 n_of_columns=18

specificity:

A |   0   0  92  10  24  24   1   1   3  24  24  24  24  24  17  75   0   0
C |  96   6   0   6  24  24   0   0   0  24  24  24  24  24  54   1   0   0
G |   0  90   4  77  24  24  17  17  30  24  24  24  24  24   8  20   0  96
T |   0   0   0   3  24  24  78  78  63  24  24  24  24  24  17   0  96   0

scan!

home
updated Mon Jan 5 23:59:33 2026