5xvo_BDE : 3D-footprint complex

structure name	E. FAE CAS1-CAS2/PRESPACER/TARGET TERNARY COMPLEX REVEALING DNA SAMPLING AND HALF-INTEGRATION STATES
reference	Nam et al. Nature 550 137 2017
source	ENTEROCOCCUS FAECALIS TX0027
experiment	X-ray (resolution=3.10, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xvo_B interface=146,150,153,206,207,208, mgwrtvvvnkhsklsyknnhlvfkaidhqelihlseidvlllettdislttmllkrlidekilvlfcddkrlpigkilpfygrhdsslqltrqlawteerkgqvwtaiiaqkitnqslhlaqrdygqkaaallamraelrlfdpaNregHaaRsyfntlfgndftreqendinaglnygytlllsifarelvqtgcftqlglkhaNQFndfnlasdlmepfrplvdqiiyenrkeafpimkrklfalfmntymykkkqmfltniatdytkhvvkvlnqeeegvpefgi > 5xvo_D interface= gwrtvvvnkhsklsyknnhlvfkaidhqelihlseidvlllettdislttmllkrlidekilvlfcddkrlpigkilpfygrhdsslqltrqlawteerkgqvwtaiiaqkitnqslhlaqrdygqkaaallamraelrlfdpanReghAarSyfntlfgndftreqendinaglnygytlllsifarelvqtgcftqlglkhanQFNdfnlasdlmepfrplvdqiiyenrkeafpimkrklfalfmntymykkkqmfltniatdytkhvvkvlnqeeegvpefgi > 5xvo_E interface=2,49,50,51,54, yRymrlllmfdmptdtasdrkayrkfrkflinegfimhqfsvyskillNDTanKamlarlkqnnpqrglitllnvtekqfsrmiylhgeqdnrvansderivflge
interface signature	NHRNQF/RASQFN/RNDTK

Estimated binding specificities ?

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# IC=9.887 IC/col=0.549 n_of_columns=18

specificity:

A |   0   1  88  11  24  24   0   0   3  24  24  24  24  24  19  72   0   0
C |  96  11   0   7  24  24   0   1   3  24  24  24  24  24  57   1   0   0
G |   0  84   7  75  24  24  12  19  37  24  24  24  24  24  13  23   0  96
T |   0   0   1   3  24  24  84  76  53  24  24  24  24  24   7   0  96   0

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updated Sat Dec 14 08:50:18 2024