5xxp_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF CBNR_DBD-DNA COMPLEX
reference	Senda et al. 'FEBS 285 977 2018
source	Cupriavidus necator
experiment	X-ray (resolution=2.55, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5xxp_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xxp_A interface=28,29,30,31,33,34,52, mefrqlkyfiavaeagnmaaaakrlhvSQPPiTRqmqaleadlgvvllersHrgieltaaghafledarrilelagrsgdrsraaar > 5xxp_B interface=28,29,30,31,33,34,52, mefrqlkyfiavaeagnmaaaakrlhvSQPPiTRqmqaleadlgvvllersHrgieltaaghafledarrilelagrsgdrsraaar
interface signature	SQPPTRH/SQPPTRH

Estimated binding specificities ?

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# IC=10.534 IC/col=0.554 n_of_columns=19

specificity:

A |   0  11  96   0  11  24  24  24  24  24  19   0   1  71  93  24  24  24   1
C |   0  15   0  96   9  24  24  24  24  24  53   0   1   9   1  24  24  24   1
G |   0   3   0   0  69  24  24  24  24  24  21  96   4   5   1  24  24  24   1
T |  96  67   0   0   7  24  24  24  24  24   3   0  90  11   1  24  24  24  93

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updated Tue Sep 10 10:15:14 2024