5xxp_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF CBNR_DBD-DNA COMPLEX
reference	Senda et al. 'FEBS 285 977 2018
source	Cupriavidus necator
experiment	X-ray (resolution=2.55, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5xxp_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xxp_A interface=28,29,30,31,33,34,52, mefrqlkyfiavaeagnmaaaakrlhvSQPPiTRqmqaleadlgvvllersHrgieltaaghafledarrilelagrsgdrsraaar > 5xxp_B interface=28,29,30,31,33,34,52, mefrqlkyfiavaeagnmaaaakrlhvSQPPiTRqmqaleadlgvvllersHrgieltaaghafledarrilelagrsgdrsraaar
interface signature	SQPPTRH/SQPPTRH

Estimated binding specificities ?

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# IC=9.835 IC/col=0.518 n_of_columns=19

specificity:

A |  92  24  24  24   0   9  90   0   7  24  24  24  24  24   9   0   0  67  96
C |   1  24  24  24   9  15   4  96  15  24  24  24  24  24  59   0   0   5   0
G |   3  24  24  24   7   9   1   0  61  24  24  24  24  24  17  96   0   7   0
T |   0  24  24  24  80  63   1   0  13  24  24  24  24  24  11   0  96  17   0

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updated Wed Jul 30 14:20:59 2025