5xxp_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF CBNR_DBD-DNA COMPLEX (LysR-type regulatory protein)
reference	Senda et al. 'FEBS 285 977 2018
source	Cupriavidus necator
experiment	X-ray (resolution=2.55, R-factor=0.222)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Bacterial regulatory helixturnhelix protei;
multimeric complexes	5xxp_AB 7d98_BPQ
redundant complexes	7d98_P
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xxp_A interface=28,29,30,31,33,34,52, mefrqlkyfiavaeagnmaaaakrlhvSQPPiTRqmqaleadlgvvllersHrgieltaaghafledarrilelagrsgdrsraaar
interface signature	SQPPTRH

Estimated binding specificities ?

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# IC=6.292 IC/col=0.629 n_of_columns=10

specificity:

A |   7  96  24  24  24   7   9  96   0   9
C |  75   0  24  24  24   7   7   0  96   7
G |   7   0  24  24  24   9   7   0   0  73
T |   7   0  24  24  24  73  73   0   0   7

scan!

Dendrogram of similar interfaces ?

matrix format

  
  LTNTHG--RTYTPT------------   L                              +--6qil_A    
                                               +--------------1 
  ------------NASTRGHTSTFT--   L   +-----------2              +--1vtn_C    
                                   !           ! 
  --------------RC--YG----KT     --3           +-----------------2acj_B    
                                   ! 
  ------KGTGKANGYAST--------   L   +-----------------------------1zlk_A

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updated Sat Jan 10 09:24:57 2026