5yej_BC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF BIOQ WITH ITS NATUREL DOUBLE-STRANDED DNA OPERATOR
reference	Guan et al. 'Biochim 1862 1843 2018
source	Mycobacterium smegmatis
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	5yej_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5yej_B interface=25,26,35,36,38,40,41, qlhkpdvvaaatkilddhgiadltMRrlareldvTPgAlYWhfankqellgavadhilrtartdtdlawreqihescralrdallshtdgaelvsasfasgqsvviteiveqlgraaraagvsdadvdaaartviyyvlgftvdeqsrrqfrfglqllvdglaah > 5yej_C interface=26,35,36,40,41, qlhkpdvvaaatkilddhgiadltmRrlareldvTPgalYWhfankqellgavadhilrtartdtadlawreqihescralrdallshtdgaelvsasfasgqsvviteiveqlgraaraagvsdadvdaaartviyyvlgftvdeqsrlqwrqfrfglqllvdglaah
interface signature	MRTPAYW/RTPYW

Estimated binding specificities ?

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# IC=16.051 IC/col=0.944 n_of_columns=17

specificity:

A |   0  24   9   9  82  96   0  96  24   0   0   0   4   0  96  68   0
C |  96  24  14   9   4   0  96   0  24  96   0   0   4  91   0   9   0
G |   0  24   9  68   4   0   0   0  24   0  96   0   4   4   0   9  96
T |   0  24  64  10   6   0   0   0  24   0   0  96  84   1   0  10   0

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updated Tue Sep 10 10:27:42 2024