5yej_BC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF BIOQ WITH ITS NATUREL DOUBLE-STRANDED DNA OPERATOR
reference	Guan et al. 'Biochim 1862 1843 2018
source	Mycobacterium smegmatis
experiment	X-ray (resolution=2.70, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5yej_B interface=25,26,35,36,38,40,41, qlhkpdvvaaatkilddhgiadltMRrlareldvTPgAlYWhfankqellgavadhilrtartdtdlawreqihescralrdallshtdgaelvsasfasgqsvviteiveqlgraaraagvsdadvdaaartviyyvlgftvdeqsrrqfrfglqllvdglaah > 5yej_C interface=26,35,36,40,41, qlhkpdvvaaatkilddhgiadltmRrlareldvTPgalYWhfankqellgavadhilrtartdtadlawreqihescralrdallshtdgaelvsasfasgqsvviteiveqlgraaraagvsdadvdaaartviyyvlgftvdeqsrlqwrqfrfglqllvdglaah
interface signature	MRTPAYW/RTPYW

Estimated binding specificities ?

contact

# IC=16.118 IC/col=0.948 n_of_columns=17

specificity:

A |   0  24  10   9  84  96   0  96  24   0   0   0   4   0  96  68   0
C |  96  24   9   9   4   0  96   0  24  96   0   0   6  92   0  10   0
G |   0  24  13  69   4   0   0   0  24   0  96   0   4   4   0   9  96
T |   0  24  64   9   4   0   0   0  24   0   0  96  82   0   0   9   0

scan!

home
updated Sat Dec 14 09:06:27 2024