5yi2_EF : 3D-footprint complex

structure name	STRUCTURE OF LACTOCOCCUS LACTIS ZITR, WILD TYPE IN COMPLEX WITH DNA
reference	Song et al. Proc.Natl.Acad.Sci.USA 114 13661 2017
source	Lactococcus lactis subsp. lactis
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5yi2_J
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5yi2_E interface=64,65,66,67,69,70, gmslanqidqflgtimqfaenkheillgkcesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq > 5yi2_F interface=63,64,65,66,68,69, mslanqidqflgtimqfaenkheillgkcesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq
interface signature	SPAATK/SPAATK

Estimated binding specificities ?

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# IC=10.800 IC/col=0.900 n_of_columns=12

specificity:

A |   0   8  70  80   0  24  75   0   0   1  84  96
C |   0  12   0   8  96  24   4   0   0   4   4   0
G |   0   4  12   4   0  24   8  96   0  12   4   0
T |  96  72  14   4   0  24   9   0  96  79   4   0

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updated Thu Jun 25 11:30:22 2026