5yi2_EF : 3D-footprint complex

structure name	STRUCTURE OF LACTOCOCCUS LACTIS ZITR, WILD TYPE IN COMPLEX WITH DNA
reference	Song et al. Proc.Natl.Acad.Sci.USA 114 13661 2017
source	Lactococcus lactis subsp. lactis
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5yi2_J
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5yi2_E interface=64,65,66,67,69,70, gmslanqidqflgtimqfaenkheillgkcesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq > 5yi2_F interface=63,64,65,66,68,69, mslanqidqflgtimqfaenkheillgkcesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq
interface signature	SPAATK/SPAATK

Estimated binding specificities ?

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# IC=10.778 IC/col=0.898 n_of_columns=12

specificity:

A |   0   5  78  96   0   0  24   0   4  18  65  96
C |   0   0   8   0  96   0  24   0   8  17   8   0
G |   0  13   2   0   0   5  24  96   8   0  10   0
T |  96  78   8   0   0  91  24   0  76  61  13   0

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updated Tue Jan 6 00:19:15 2026