5yi2_EF : 3D-footprint complex

structure name	STRUCTURE OF LACTOCOCCUS LACTIS ZITR, WILD TYPE IN COMPLEX WITH DNA
reference	Song et al. Proc.Natl.Acad.Sci.USA 114 13661 2017
source	Lactococcus lactis subsp. lactis
experiment	X-ray (resolution=2.60, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5yi2_E interface=64,65,66,67,69,70, gmslanqidqflgtimqfaenkheillgkcesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq > 5yi2_F interface=63,64,65,66,68,69, mslanqidqflgtimqfaenkheillgkcesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq
interface signature	SPAATK/SPAATK

Estimated binding specificities ?

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# IC=10.725 IC/col=0.894 n_of_columns=12

specificity:

A |   0   4  83  96   0   2  24   0   2  12  62  96
C |   0   2   7   0  96   2  24   0   2  15  15   0
G |   0   2   4   0   0   4  24  94  15  15   4   0
T |  96  88   2   0   0  88  24   2  77  54  15   0

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updated Sat Dec 14 09:06:45 2024