| structure name | STRUCTURE OF LACTOCOCCUS LACTIS ZITR, WILD TYPE IN COMPLEX WITH DNA (Zinc transport transcriptional regulator) |
| reference | Song et al. Proc.Natl.Acad.Sci.USA 114 13661 2017 |
| source | Lactococcus lactis subsp. lactis |
| experiment | X-ray (resolution=2.60, R-factor=0.193) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | MarR family; Bacterial regulatory protein, arsR fam; Iron dependent repressor, Nterminal D; |
| multimeric complexes | 5yi2_EF 5yi3_IJ |
| redundant complexes |  5yi3_I
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SPAATK |
Estimated binding specificities ?
| readout + contact |  |
A | 69 0 0 19 61 96 C | 0 0 0 17 8 0 G | 26 96 0 8 19 0 T | 1 0 96 52 8 0scan! |
Dendrogram of similar interfaces ?
matrix format----STPTATATTTKG-------- L +--------5yi2_J +----------4 --------------------RT-- ! +--------3gfi_A +-6 ----TT--PTTCSTNT-------- L ! ! +4lln_I ! +------------------2 --NGLTKTPTSTTT----RTRT-- L +-7 ! +7el3_B ! ! +-1 --ET--RGTCTGSTRG----KT-- L ! ! +6q2b_B ! ! ----------------YGRG---- ! +---------------------4wcg_A +--9 ----STQTPTPGTTRG------HT L ! ! +-----5xxp_A ! ! +------------3 ----ST--PTTCSTQC--RA---- L ! ! +---5 +-----1ddn_B +-10 ! ! ! ----NTHG--RTYTPT----RT-- L ! ! +-8 +------------------6qil_A ! ! ! --------------RCYG------ -11 ! +----------------------2acj_B ! ! --------KGTA--TA--RG---- L ! +--------------------------1xsd_A ! LG--------TAKGTAHTRG---- L +----------------------------6jhe_A |
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updated Fri Sep 13 21:02:57 2024