5yi2_J : 3D-footprint complex

structure name	STRUCTURE OF LACTOCOCCUS LACTIS ZITR, WILD TYPE IN COMPLEX WITH DNA (Zinc transport transcriptional regulator)
reference	Song et al. Proc.Natl.Acad.Sci.USA 114 13661 2017
source	Lactococcus lactis subsp. lactis
experiment	X-ray (resolution=2.60, R-factor=0.193)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	MarR family; Bacterial regulatory protein, arsR fam; Iron dependent repressor, Nterminal D;
multimeric complexes	5yi2_EF 5yi3_IJ
redundant complexes	5yi3_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5yi2_J interface=63,64,65,66,68,69, mslanqidqflgtimqfaenkheillgkcesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq
interface signature	SPAATK

Estimated binding specificities ?

readout + contact

# IC=5.205 IC/col=0.868 n_of_columns=6

specificity:

A |  52   0   0  19  61  96
C |   8   0   0   0  19   0
G |  26  96   0   8   8   0
T |  10   0  96  69   8   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --------------RC----YG----             +-----------------------------2acj_B    
                                       +-1 
  --NTHG--RT--YTPT--------RT   L     +-2 +-----------------------------6qil_A    
                                     ! ! 
  LG------TA--KGTA----HTRG--   L   +-3 +-----------------------------6jhe_A    
                                   ! ! 
  ------ST--TAQC----ST------     --4 +-----------------------------8b4b_W    
                                   ! 
  ------KGTG--KANGYA--ST----   L   +-----------------------------1zlk_A

home
updated Sat Jan 10 09:30:23 2026