5yi3_IJ : 3D-footprint complex

structure name	STRUCTURE OF LACTOCOCCUS LACTIS ZITR, C30S MUTANT IN COMPLEX WITH DNA
reference	Song et al. Proc.Natl.Acad.Sci.USA 114 13661 2017
source	Lactococcus lactis subsp. lactis (strain IL1403) / Lactococcus lactis subsp. lactis (strain IL1403) / Lactococcus lactis subsp. lactis (strain IL1403) / Lactococcus lactis subsp. lactis (strain IL1403)
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5yi2_J
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5yi3_I interface=63,64,65,66,68,69, mslanqidqflgtimqfaenkheillgksesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq > 5yi3_J interface=63,64,65,66,68,69, mslanqidqflgtimqfaenkheillgksesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq
interface signature	SPAATK/SPAATK

Estimated binding specificities ?

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# IC=12.657 IC/col=1.055 n_of_columns=12

specificity:

A |   6   0  87  87   0  11  93   0   0   3  88  84
C |   3   0   3   3  96   3   0   0   0   3   5   3
G |   3   0   3   3   0   7   0  96   0   6   3   3
T |  84  96   3   3   0  75   3   0  96  84   0   6

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updated Thu Jun 25 11:30:33 2026