5yi3_IJ : 3D-footprint complex

structure name	STRUCTURE OF LACTOCOCCUS LACTIS ZITR, C30S MUTANT IN COMPLEX WITH DNA
reference	Song et al. Proc.Natl.Acad.Sci.USA 114 13661 2017
source	Lactococcus lactis subsp. lactis (strain IL1403) / Lactococcus lactis subsp. lactis (strain IL1403) / Lactococcus lactis subsp. lactis (strain IL1403) / Lactococcus lactis subsp. lactis (strain IL1403)
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5yi2_J
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5yi3_I interface=63,64,65,66,68,69, mslanqidqflgtimqfaenkheillgksesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq > 5yi3_J interface=63,64,65,66,68,69, mslanqidqflgtimqfaenkheillgksesdvkltstqehilmllaeqistnakiaeklkiSPAAvTKalkklqeqelikssratndervvlwsltekavpvakehathhektlstyqelgnkftdeeqeviskflsalteefq
interface signature	SPAATK/SPAATK

Estimated binding specificities ?

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# IC=12.433 IC/col=1.036 n_of_columns=12

specificity:

A |   3   0  85  96   0   3  74   0   3   3  85  87
C |   5   0   3   0  96   2  10   0   3   3   5   3
G |   3   0   5   0   0   3   9  96   3   3   3   3
T |  85  96   3   0   0  88   3   0  87  87   3   3

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updated Tue Jan 6 00:19:28 2026