interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING HISTONE H3.1 CATD(V76Q, K77D)
(HISTONE H3.1,HISTONE H3-LIKE CENTROMERIC PROTEIN A,HISTONE...)
referenceKurumizaka et al. 'Nat 10 576 2019
sourceHOMO SAPIENS
experimentX-ray (resolution=2.58, R-factor=0.215)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes5zbx_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG--------                                +8jh2_e    
                             +--------------3 
  RG--RT----         +-------7              +8grq_A    
                     !       ! 
  RGLCRT----       +-9       +--------------8hr1_E    
                   ! ! 
  ----RG----       ! +----------------------8jla_C    
                   !  
  ----RT----       !                          +8u14_G    
                   !           +--------------1 
  ----RG----     -10           !              +8ox0_C    
                   !         +-5 
  ----RG----       !         ! !              +8txv_G    
                   !      +--6 +--------------2 
  ----RG----       !      !  !                +5x0y_G    
                   !      !  ! 
  ----RA--RA       +------8  +--------------6a5l_g    
                          ! 
  ----RA----              !        +--------1zla_C    
                          +--------4 
  ------RA--                       +--------6g0l_D    
                 

home
updated Sun Aug 3 10:43:39 2025