5zbx_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING HISTONE H3.1 CATD(V76Q, K77D) (HISTONE H3.1,HISTONE H3-LIKE CENTROMERIC PROTEIN A,HISTONE...)
reference	Kurumizaka et al. 'Nat 10 576 2019
source	HOMO SAPIENS
experiment	X-ray (resolution=2.58, R-factor=0.215)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5z23_ABCDEFGH 5zbx_ABCDEFGH
redundant complexes	5z23
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5zbx_A interface=3,28, phRyrpgtvalreirryqkstellirkLpfqrlvreicqdftdfnwqaqallalqeaaeaflvhlfedaylltlhakrvtimpkdiqlarrirge

  
  RG----                                  +8jh2_e    
                          +---------------1 
  RGRT--           +------6               +6px1_A    
                   !      ! 
  --RC--       +---7      +---------------7ux9_E    
               !   ! 
  --RA--       !   +----------------------7e9c_F    
               ! 
  --RT--       !                          +8u14_G    
             --9               +----------3 
  --RG--       !               !          +8upf_G    
               !  +------------5 
  --RARA       !  !            !           +6a5l_g    
               !  !            !         +-2 
  --RG--       +--8            +---------4 +8txv_G    
                  !                      ! 
  --RG--          !                      +8rbx_V    
                  ! 
  --RC--          +-----------------------7yqk_C

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updated Sat Jan 10 09:34:03 2026