3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

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updated Tue Jan 6 00:30:10 2026

structure name	THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING HISTONE H3.1 CATD(V76Q, K77D)
reference	Kurumizaka et al. 'Nat 10 576 2019
source	HOMO SAPIENS
experiment	X-ray (resolution=2.58, R-factor=?)
structural superfamily	Histone-fold;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	5gtc_H 5o9g_F 5zbx_A 6a5l_d 6a5l_g 6r8y_H 6upk_H 6x0n_f 7d1z_H 7jzv_N 7lyb_G 7nkx_f 7scy_H 7u0g_M 7vdt_B 7xzx_N 8h0v_h 8txv_G 8u14_G 8upf_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5zbx_A interface=3,28, phRyrpgtvalreirryqkstellirkLpfqrlvreicqdftdfnwqaqallalqeaaeaflvhlfedaylltlhakrvtimpkdiqlarrirge > 5zbx_B interface=21, niqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfg > 5zbx_C interface=1,32, RakaktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 5zbx_D interface= SrkesysiyvykvlkqvhpdtgisskamgimNsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa > 5zbx_E interface=6,31, vkkphRyrpgtvalreirryqkstellirkLpfqrlvreicqdftrgvdfnwqaqallalqeaaeaflvhlfedaylltlhakrvtimpkdiqlarrirge > 5zbx_F interface=18,28, hrkvlrdniqgitkpaiRrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5zbx_G interface= ktrssraglqfpvgrvhRllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 5zbx_H interface=1, Rkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa