6bd0_A : 3D-footprint complex

structure name	I-ONUI K227Y, D236A BOUND TO COGNATE SUBSTRATE (PRE-CLEAVAGE COMPLEX) (Ribosomal protein 3homing endonuclease-like protein fusion)
reference	McMurrough et al. 'To ? ? ?
source	Ophiostoma novo-ulmi subsp. americana
experiment	X-ray (resolution=1.45, R-factor=0.166)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
redundant complexes	3qqy_A 6bdb_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6bd0_A interface=21,25,27,29,31,32,37,39,43,45,69,73,75,77,177,179,181,183,185,186,192,194,198,200,220,222,224,226,229,231,237,296, esrresinpwiltgfadaegSfllRiRnNnKSsvgyStElgfQiTlhnkdksileniqstwkvgvianSgdnAvSlKvtrfedlkviidhfekyplitqklgdymlfkqafcvmenkehlkingikelvrikaklnwgltdelkkafpeiiskerslinknipnfkwlagftsgegCfFvNlIkSKsklgvQvQlvfSiTqhikdknlmnslitylgcgYiKeYnKseFsWlafvvTkfsdindkiipvfqentligvkledfedwckvaklieekkhltesgldeikkiklnmnKgrvf
interface signature	SRRNKSSEQTSASKCFNISKQQSTYKYKFWTK

Estimated binding specificities ?

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# IC=21.797 IC/col=1.038 n_of_columns=21

specificity:

A |  13  24   0   0   0  96   0   0  13  24  24   0   0  96  96   0   0   0   0   0   0
C |  16  24   0  96  96   0  96   0  13  24  24   0  96   0   0  96  96   0   0   0   0
G |  13  24   0   0   0   0   0   0  13  24  24   0   0   0   0   0   0   0   0   0   0
T |  54  24  96   0   0   0   0  96  57  24  24  96   0   0   0   0   0  96  96  96  96

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Dendrogram of similar interfaces ?

matrix format

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updated Sat Jan 10 09:46:06 2026