interface graph thumbnail
legend  pdf

structure nameMBD2 IN COMPLEX WITH A PARTIALLY METHYLATED DNA
referenceStructural Genomics Consortium (SGC)
sourceHomo sapiens
experimentX-ray (resolution=1.84, R-factor=?)
structural superfamilyDNA-binding domain;
reference complex6c1t_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRDYR/RDYR

Estimated binding specificities ?

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# IC=6.633 IC/col=0.829 n_of_columns=8 specificity:   
A |  67  24  96   0   9   9   0   0
C |  11  24   0  96  11  67  96   0
G |   9  24   0   0   9   9   0  96
T |   9  24   0   0  67  11   0   0
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updated Wed Jul 30 15:36:05 2025