2ky8_A : 3D-footprint complex

structure name	SOLUTION STRUCTURE AND DYNAMIC ANALYSIS OF CHICKEN MBD2 METHYL BINDING DOMAIN BOUND TO A TARGET METHYLATED DNA SEQUENCE (METHYL-CPG-BINDING DOMAIN PROTEIN 2)
source	GALLUS GALLUS
experiment	NMR
structural superfamily	DNA-binding domain;
sequence family	MethylCpG binding domain;
multimeric complexes	6c1a_AB 6c1a_EF 6c1t_AD 6c1u_AB 6c1u_EF 6c1v_AB 6c1v_EF
redundant complexes	6c1a_E 6c1t_D 6c1u_A 6c1v_A 6c2f_J
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2ky8_A interface=22,30,44, dkqgrtdcpalppgwkkeeviRksglsagKsdvyyfspsgkkfRskpqlarylgnavdlscfdfrtgkmm
interface signature	RKR

Estimated binding specificities ?

contact

# IC=2.674 IC/col=0.669 n_of_columns=4

specificity:

A |  11   9   0  69
C |   9  67   0   9
G |  67  11  96   9
T |   9   9   0   9

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RGTTRT--YA--RG                                    +6d1t_A    
                                   +----------------1 
  RG------YCKARG                   !                +6cnp_A    
                       +-----------3 
  RG----DTYG--RT       !           !               +-6ogk_A    
                     --4           +---------------2 
  RG------YC--RG       !                           +-6c1y_A    
                       ! 
  RG----------RG       +-----------------------------6ccg_B

home
updated Mon Jun 29 15:21:18 2026