6c2s_AD : 3D-footprint complex

structure name	TRANSCRIPTIONAL REPRESSOR, COUR, BOUND TO A 23-MER DNA DUPLEX
reference	Cogan et al. 'J. 293 11727 2018
source	Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
experiment	X-ray (resolution=2.85, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6c2s_A interface=65,66,67,68,70,92, selkmgelsellgyalkraqlrvfedflhcvapvqltpaqfsvlllldanpgrnqteiattlgiLRPNfVamldalegrglcvrtrspsdrRshilmltdkgratlarakklvatrhedrltellgrdnrdallsmlatiar > 6c2s_D interface=65,66,67,68,70,92, selkmgelsellgyalkraqlrvfedflhcvapvqltpaqfsvlllldanpgrnqteiattlgiLRPNfVamldalegrglcvrtrspsdrRshilmltdkgratlarakklvatrhedrltellgrdnrdallsmlatiar
interface signature	LRPNVR/LRPNVR

Estimated binding specificities ?

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# IC=14.229 IC/col=0.678 n_of_columns=21

specificity:

A |  82   2  24  24   2   8  94   0  88  24  24  24   2  96   2  77  82  24  24  90   0
C |   1   4  24  24   2  13   0   0   4  24  24  24   2   0   2  17   0  24  24   2   0
G |  13   2  24  24   2  11   0   0   2  24  24  24   4   0   4   0  14  24  24   2   2
T |   0  88  24  24  90  64   2  96   2  24  24  24  88   0  88   2   0  24  24   2  94

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updated Sat Dec 14 10:08:28 2024