interface graph thumbnail
legend  pdf

structure nameTRANSCRIPTIONAL REPRESSOR, COUR, BOUND TO A 23-MER DNA DUPLEX
(Transcriptional regulator, MarR family)
referenceCogan et al. 'J. 293 11727 2018
sourceRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
experimentX-ray (resolution=2.85, R-factor=0.218)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyMarR family;
multimeric complexes6c2s_AD 6c2s_BC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureLRPNVR

Estimated binding specificities ?

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# IC=6.292 IC/col=0.699 n_of_columns=9 specificity:   
A |  73   0  24  24   7   7  75   0  96
C |   7   0  24  24   9   7   7   0   0
G |   7   0  24  24   7   9   7   0   0
T |   9  96  24  24  73  73   7  96   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ----RGSTRTSTHG----------RA----   L                     +---------------3zpl_B    
                                                   +-----2 
  --DCLT--AGTTRG----RG----RA----   L               !     !               +5h3r_A    
                                           +-------3     +---------------1 
  ------------RC--YG----KT------           !       !                     +2acj_B    
                                         +-4       ! 
  TT----KATTQTTG--LTRTKA----FTYT   L     ! !       +---------------------2p7c_B    
                                       +-5 ! 
  ----RGTCTA--RGNT--------RT----   L   ! ! +-----------------------------4fx4_B    
                                     --6 ! 
  ----------------YG------------       ! +-----------------------------3eyi_B    
                                       ! 
  --ITRGECSCSGKG----------------   L   +-----------------------------5i2d_R    
                                     

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updated Mon Jun 29 22:20:55 2026