6c2s_BC : 3D-footprint complex

structure name	TRANSCRIPTIONAL REPRESSOR, COUR, BOUND TO A 23-MER DNA DUPLEX
reference	Cogan et al. 'J. 293 11727 2018
source	Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
experiment	X-ray (resolution=2.85, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6c2s_B interface=65,66,67,68,70,92, selkmgelsellgyalkraqlrvfedflhcvapvqltpaqfsvlllldanpgrnqteiattlgiLRPNfVamldalegrglcvrtrspsdrRshilmltdkgratlarakklvatrhedrltellgrdnrdallsmlatiar > 6c2s_C interface=65,66,67,68,70,92, selkmgelsellgyalkraqlrvfedflhcvapvqltpaqfsvlllldanpgrnqteiattlgiLRPNfVamldalegrglcvrtrspsdrRshilmltdkgratlarakklvatrhedrltellgrdnrdallsmlatiar
interface signature	LRPNVR/LRPNVR

Estimated binding specificities ?

readout + contact

# IC=14.699 IC/col=0.700 n_of_columns=21

specificity:

A |  77   3  24  24   0  14  96   0  84  24  24  24   0  96   0  77  96  24  24  93   3
C |   7   3  24  24   0   3   0   0   3  24  24  24   0   0   8   7   0  24  24   0   9
G |   7   0  24  24   0  17   0   0   6  24  24  24   0   0   0   7   0  24  24   3   3
T |   5  90  24  24  96  62   0  96   3  24  24  24  96   0  88   5   0  24  24   0  81

scan!

home
updated Sat Dec 14 10:08:47 2024