6c2s_BC : 3D-footprint complex

structure name	TRANSCRIPTIONAL REPRESSOR, COUR, BOUND TO A 23-MER DNA DUPLEX
reference	Cogan et al. 'J. 293 11727 2018
source	Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
experiment	X-ray (resolution=2.85, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6c2s_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6c2s_B interface=65,66,67,68,70,92, selkmgelsellgyalkraqlrvfedflhcvapvqltpaqfsvlllldanpgrnqteiattlgiLRPNfVamldalegrglcvrtrspsdrRshilmltdkgratlarakklvatrhedrltellgrdnrdallsmlatiar > 6c2s_C interface=65,66,67,68,70,92, selkmgelsellgyalkraqlrvfedflhcvapvqltpaqfsvlllldanpgrnqteiattlgiLRPNfVamldalegrglcvrtrspsdrRshilmltdkgratlarakklvatrhedrltellgrdnrdallsmlatiar
interface signature	LRPNVR/LRPNVR

Estimated binding specificities ?

readout + contact

# IC=14.657 IC/col=0.698 n_of_columns=21

specificity:

A |  86   0  24  24   0   3  86   0  92  24  24  24   3  96   0  67  96  24  24  86   5
C |   3   3  24  24   0   3   3   0   3  24  24  24   3   0   0   8   0  24  24   4  12
G |   4   1  24  24   0   4   4   0   1  24  24  24   4   0   0   9   0  24  24   3   3
T |   3  92  24  24  96  86   3  96   0  24  24  24  86   0  96  12   0  24  24   3  76

scan!

home
updated Tue Sep 10 11:23:27 2024