6cnd_ABEPRS : 3D-footprint complex

structure name	YEAST RNA POLYMERASE III NATURAL OPEN COMPLEX (NOC)
experiment	NMR
structural superfamily	"Winged helix" DNA-binding domain;NTF2-like;TATA-box binding protein-like;Cyclin-like;Zinc beta-ribbon;Homeodomain-like;
reference complex	6cnb_O 6cnb_P 6cnb_R 6cnd_S
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6cnd_A interface=341,879,1341, kevvvsetpkrikglefsalsaadivaqsevevstrdlfdlekdrapkangaldpkmgvsssslecatchgnlaschghfghlklalpvfhigyfkatiqilqgickncsaillsetdkrqflhelrrpgvdnlrrmgilkkildqckkqrrclhcgalngvvkkaaagagsaalkiihdtfrwvgkksapekdiwvgewkevlahnpeleryvkrcmddlnplktlnlfkqiksadcellgidatvpsgrpetyiwrylpappvcirpsvmmqdspasneddltvklteivwtsslikagldkgisinnmmehwdylqltvamyinsdsvnpamlpgssNgggkvkpirgfcqrlkgkqgrfrgnlsgkrvdfsgrtvispdpnlsidevavpdrvakvltypekvtrynrhklqelivngpnvhpganyllkrnedarrnlrygdrmklaknlqigdvverhledgdvvlfnrqpslhrlsilshyakirpwrtfrlnecvctpynadfdgdemnlhvpqteearaeainlmgvknnlltpksgepiiaatqdfitgsylishkdsfydratltqllsmmsdgiehfdipppaimkpyylwtgkqvfsllikpnhnspvvinldaknkvfvppkskslpnemsqndgfviirgsqilsgvmdksvlgdgkkhsvfytilrdygpqeaanamnrmaklcarflgnrgfsigindvtpaddlkqkkeelveiayhkcdelitlfnkgeletqpgcneeqtleakiggllskvreevgdvcineldnwnaplimatcgskgstlnvsqmvavvgqqiisgnrvpdgfqdrslphfpknsktpqskgfvrnsffsglsppeflfhaisgreglvdtavktAetgymsrrlmksledlscqydntvrtsangivqftyggdgldplemegnaqpvnfnrswdhaynitfnnqdkgllpyaimetaneilgpleerlvrydnsgclvkredlnkaeyvdqydaerdfyhslreyingkatalanlrksrgmlglleppakelqgidpdetvpdnvktsvsqlyriseksvrkfleialfkyrkarlepgtaigaigaqsigepmnvtlgvprikeiinaskvistpiinavlvndnderaarvvkgrvektllsdvafyvqdvykdnlsfiqvridlgtidklqleltiediavaitrasklkiqasdvniigkdriainvfpsendvfyrmqqlrralpdvvvkglpdisravinirddgkrellvegyglrdvmctdgvigsrtttnhvlevfsvlgieaarysiireinytmsnhgmsvdprhiqllgdvmtykgevlgitRfglskmrdsvlqlasfekttdhlfdaafymkkdavegvseciilgqtmsigtgsfkvvkgtnisekdlvpkrclfeslsneaalkan > 6cnd_B interface=445,446,1021, deintaqdkwhllpaflkvkglvkqhldsfnyfvdtdlkkiikanqlilsdvdpefylkyvdirvgkksssstkdyltpphecrlrdmtysapiyvdieytrgrniimhkdveigrmpimlrsnkcilydadeskmaklnecpldpggyfivngtekvilvqeqlsknriiveadekkgivqasvtsstherksktyvitkngkiylkhnsiaeeipiaivlkacgilsdleimqlvcgndssyqdifavnleesskldiytqqqaleyigakvktmrrqkltilqegieaiattviahltvealdfrekalyiammtrrvvmamynpkmiddrdyvgnkrlelagqlisllfedlfkkfnndfklsidkvlkkpnrameydallsinvhsnnitsglnraistgnwslkrfkmeragvthvlsrlsyisalgmmtrissqfekSRkvsgpralqpsqfgmlctadtpegeacglvknlalmthittddeeepikklcyvlgveditlidsaslhlnygvylngtligsirfptkfvtqfrhlrrtgkvsefisiysnshqmavhiatdggricrpliivsdgqsrvkdihlrklldgeldfddflklglveyldvneendsyialyekdivpsmthleiepftilgavaglipyphhnqsprntyqcamgkqaigaiaynqfkridtllylmtypqqpmvktktielidydklpagqnatvavmsysgydiedalvlnkssidrgfgrcetrrktttvlkryanhtqdiiggmrvdengdpiwqhqslgpdglgevgmkvqsgqiyinksvptnsadapnpnnvnvqtqyreapviyrgpepshidqvmmsvsdndqalikvllrqnrrpelgdkfssrhgqkgvcgiivkqedmpfndqgivpdiimnphgfpsrmtvgkmielisgkagvlngtleygtcfggskledmskilvdqgfnysgkdmlysgitgeclqayiffgpiyyqklkhmvldkmharargpravltrqptegrsRdgglrlgemerdcviaygasqlllerlmissdafevdvcdkcglmgysgwcttcksaeniikmtipyaakllfqellsmniaprlrledifqq > 6cnd_E interface= mdqenernisrlwrafrtvkemvkdrgyfitqeevelpledfkakycdsmgrpqrkmmsfqanpteesiskfpdmgslwvefcdepsvgvktmktfvihiqeknfqtgifvyqnnitpsamklvpsippatietfneaalvvnithhelvpkhirlssdekrellkryrlkesqlpriqradpvalylglkrgevvkiirksetsgryasyricm > 6cnd_P interface= qlsdnaktlhsqmmskgigalftqqelqkqmgigsltdlmsivqelldknliklvkqndelkfqgvleseaqkkatmsaeealvysyieasgregiwsktikartnlhqhvvlkclkslesqryvksvksvkfptrkiymlyslqpsvdeldiefinslltivwrfisentfpngfknfengpkknvfyapnvknysttqeilefitaaqvanveltpsnirslcevlvyddklekvthdcyrvtlesilqmsifnyfkmfpaskhdkevvyfdewt > 6cnd_R interface=41,43,45,223,276,278,306,321,323,329,365,366,368,397,398,412,414,420,422, mpvcknchgteferdlsnanndlvckacgvvsednpivseVaLeSreatlnnarrklravsyalhipeyitdaafqwyklalannfvqgrrsqnviasclyvacrkekthhmlidfssrlqvsvysigatflkmvkklhitelpladpslfiqhfaekldladkkikvvkdavklaqrmskdwmfegrrpagiagacillacrmnnlrrthteivavshvaeEtlqqrlnefkntkaaklsvqkfrendvedgearppsfvknrkkesgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvtgakseddsklasrkyariiqkigfaakftdfkiQNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkmsgsprnlhllpttdtylskvsddpdnledvddeelnahllneeasklkeriwiglnadflleqeskrlkqeadia > 6cnd_S interface= xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxXxXtAiqlklnpdgtmaideetmvvdrhknasieneykekvdenpfanlynygsygrgsytdpwtveemikfykalsmwgtdfnlisqlypyrsrkqvkakfvneekkrpilielalrsklppnfdeycceikknigtvadfneklielqnehkhhmkeieeakntakeedqtaqrl
interface signature	NAR/SRR///VLSENVFLFVQNVFPLFVT/XXA

Estimated binding specificities ?

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# IC=12.414 IC/col=0.355 n_of_columns=35

specificity:

A |   4   4  24  24  24  24  24  24  24  96  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0   4  82  82   0  69  24  24  24   4   0
C |   6   4  24  24  24  24  24  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96   4   4   4   0   8  24  24  24   0   0
G |  82   1  24  24  24  24  24  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   6   4   4   0   6  24  24  24  91   0
T |   4  87  24  24  24  24  24  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  82   6   6  96  13  24  24  24   1  96

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updated Thu Jun 25 13:00:03 2026