6cnb_R : 3D-footprint complex

structure name	YEAST RNA POLYMERASE III INITIAL TRANSCRIBING COMPLEX
experiment	NMR
structural superfamily	TATA-box binding protein-like;Cyclin-like;Zinc beta-ribbon;
sequence family	Transcription factor TFIID or TATAb; Transcription factor TFIIB repeat; TFIIB zincbinding;
multimeric complexes	6cnb_ABEPRS 6cnc_ABEOPRS 6cnd_ABEPRS 6cnf_ABEPRS
redundant complexes	6cnc 6cnd 6cnf
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6cnb_R interface=43,45,223,276,278,306,321,323,331,365,366,368,397,398,412,414,420,422, mpvcknchgteferdlsnanndlvckacgvvsednpivsevaLeSreatlnnarrklravsyalhipeyitdaafqwyklalannfvqgrrsqnviasclyvacrkekthhmlidfssrlqvsvysigatflkmvkklhitelpladpslfiqhfaekldladkkikvvkdavklaqrmskdwmfegrrpagiagacillacrmnnlrrthteivavshvaeEtlqqrlnefkntkaaklsvqkfrendvedgearppsfvknrkkesgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmvvTgakseddsklasrkyariiqkigfaakftdfkiQNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkmsgsprnlhllpttdtylskvsddpdnledvddeelnahllneeasklkeriwiglnadflleqeskrlkqeadia
interface signature	LSENVFLFTQNVFPLFVT

Estimated binding specificities ?

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# IC=8.619 IC/col=0.410 n_of_columns=21

specificity:

A |  76  24  24  24  24  24  24  24  24  24  24  24  24   8  57   0   0  96  66   0  96
C |   6  24  24  24  24  24  24  24  24  24  24  24  24   6  12  96   0   0  12   0   0
G |   6  24  24  24  24  24  24  24  24  24  24  24  24   6  15   0   0   0  12   0   0
T |   8  24  24  24  24  24  24  24  24  24  24  24  24  76  12   0  96   0   6  96   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  LAST--EG--NTVAFALAFT--TCQANTVAFAPALAFTVTTT   L                 +-------------6cnb_R    
                                                        +--------3 
  --STQTEG----------------------------------         +--5        +-------------6f40_V    
                                                     !  ! 
  ----------NTVTFTLTFAVATT--NAVTFAPALTFTVATA   L     !  +----------------------7nvu_O    
                                                     ! 
  ----------NAVTFTLTFAVATA--NTVTFAPALAFTVATA   L   +-6                           +1ytb_A    
                                                   ! !                         +-1 
  ----------NTVAFCLTFAVATT--NAVTFTPALTFTVATA   L   ! !     +-------------------2 +4wzs_D    
                                                   ! !     !                   ! 
  ----------NTVTFALAFTVATT--NAVTFTPALTFAVTTA     --7 +-----4                   +4roc_B    
                                                   !       ! 
  ----------NTVTFTLTFAVATT--NAVTFTPALTFAVATA   L   !       +-------------------1qna_B    
                                                   ! 
  ------VCTC--------------------------------       +---------------------------7nvu_M

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updated Mon Jun 29 22:25:54 2026