6cnb_R : 3D-footprint complex

structure name	YEAST RNA POLYMERASE III INITIAL TRANSCRIBING COMPLEX
experiment	NMR
structural superfamily	TATA-box binding protein-like;Cyclin-like;Zinc beta-ribbon;
sequence family	Transcription factor TFIID or TATAb; Transcription factor TFIIB repeat; TFIIB zincbinding;
multimeric complexes	6cnb_ABEPRS 6cnc_ABEOPRS 6cnd_ABEPRS 6cnf_ABEPRS
redundant complexes	6cnd_R 6cnf_R 6cnc
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6cnb_R interface=45,223,276,278,306,321,323,331,365,366,368,397,398,412,414,420,422, mpvcknchgteferdlsnanndlvckacgvvsednpivsevaleSreatlnnarrklravsyalhipeyitdaafqwyklalannfvqgrrsqnviasclyvacrkekthhmlidfssrlqvsvysigatflkmvkklhitelpladpslfiqhfaekldladkkikvvkdavklaqrmskdwmfegrrpagiagacillacrmnnlrrthteivavshvaeEtlqqrlnefkntkaaklsvqkfrendvedgearppsfvknrkkesgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmvvTgakseddsklasrkyariiqkigfaakftdfkiQNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkmsgsprnlhllpttdtylskvsddpdnledvddeelnahllneeasklkeriwiglnadflleqeskrlkqeadia
interface signature	SENVFLFTQNVFPLFVT

Estimated binding specificities ?

contact

# IC=7.588 IC/col=0.948 n_of_columns=8

specificity:

A |   0  96  16   0  96   0  16  80
C |   8   0  16   0   0   0  16   8
G |   0   0   8   0   0  96  16   8
T |  88   0  56  96   0   0  48   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  LAST--EG--NTVAFALAFT--TCQANTVAFAPALAFTVTTT   L                 +-------------6cnb_R    
                                                        +--------3 
  --STQTEG----------------------------------         +--5        +-------------6f40_V    
                                                     !  ! 
  ----------NTVTFTLTFAVATT--NAVTFAPALTFTVATA   L     !  +----------------------7nvu_O    
                                                     ! 
  ----------NAVTFTLTFAVATA--NTVTFAPALAFTVATA   L   +-6                           +1ytb_A    
                                                   ! !                         +-1 
  ----------NTVAFCLTFAVATT--NAVTFTPALTFTVATA   L   ! !     +-------------------2 +4wzs_D    
                                                   ! !     !                   ! 
  ----------NTVTFALAFTVATT--NAVTFTPALTFAVTTA     --7 +-----4                   +4roc_B    
                                                   !       ! 
  ----------NTVTFTLTFAVATT--NAVTFTPALTFAVATA   L   !       +-------------------1qna_B    
                                                   ! 
  ------VCTC--------------------------------       +---------------------------7nvu_M

home
updated Tue Dec 19 12:26:06 2023