6dt8_AB : 3D-footprint complex

structure name	BACTERIOPHAGE N4 RNA POLYMERASE II ELONGATION COMPLEX 1
reference	Murakami et al. 'J. 293 13616 2018
source	ENTEROBACTERIA PHAGE N4
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	DNA/RNA polymerases;
reference complex	6dta_A 6dta_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6dt8_A interface=58,59,60,103,104,221,225, stiehqmhleklynknqllprmrqefeensgidfkaffahigidykfgidamvqmalHKRadlptlvgtlrhhcksaqevadnlfkmasedcfnfdptidkfIViytisddvqheldsfqyplpmvvrpklltknygtgyftcnksvilkknhtdddicldhlnrmnkiplsinwdvahmvknewanldafqkydrtahevmglltqegnkfylthrpdkRgrtYsqgyhvnyqgtswnkavlefaekevid > 6dt8_B interface=143,148,235,237,245, mqtftareylkidiannygldkedwddriawfdknennllnlvreaeepalfyagvkawmdvkegkpigypvaldatssglqilacltgdrraaelcnvvnyrdesgkvkrrdaytviynkmlntlgkgarikrndckqaimTalygSeakpkevfgegimlnvfestmnveapavwelnkfwlqcgnpeafvyhwvmpdgfnvyikvmvnevetvhfldkpydcvrkvqgteeKtRmlsanttHsidglvvrelvrrcdydknqieyikalcngeaeykaseknygkamelwgyyektgfltarifdyldsetiklvntqdildliesmpkkpfhvltvhdcfrclpnygndirrqynnllatiakgdllsfimsqvigqevtigkldptlwedvleteyals
interface signature	HKRIVRY/TSKRH

Estimated binding specificities ?

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# IC=5.665 IC/col=0.567 n_of_columns=10

specificity:

A |  96   0  13  13  24  24  24  24  96  96
C |   0  96  54  41  24  24  24  24   0   0
G |   0   0  16  13  24  24  24  24   0   0
T |   0   0  13  29  24  24  24  24   0   0

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updated Tue Sep 10 11:59:28 2024