6eko_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TYPE IIP RESTRICTION ENDONUCLEASE PFOI WITH COGNATE DNA (Restriction endonuclease PfoI)
reference	Tamulaitiene et al. 'Nucleic 47 997 2019
source	Pseudomonas fluorescens
experiment	X-ray (resolution=2.28, R-factor=0.209)
multimeric complexes	6eko_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6eko_A interface=100,105,108,109,188,190,191,192,238,246,256, mqkyrlyekdgspvqdfnrfvkgwldiefglkehqppkvfdtirdkyneaieavvlsgvaprtahkaalstltellfghdlakelsarldiqpigvggfRsahsQafAKnvgenfvnlmvyalacilkdnddvlvdkglpphlkkaltlsrecrikdtlreikipiegdlcvfsrsnhnaivisaatRlKEVfhigtmwalfsdvakdeyclnkwglkvesseslkdtmyvfatadmInkdgarsQgcdveretpRnliamdasffdyvfvskmgighvssdlslkygreslfhelgciidmieqkfdill
interface signature	RQAKRKEVIQR

Estimated binding specificities ?

readout + contact

# IC=9.003 IC/col=1.000 n_of_columns=9

specificity:

A |   0   0   0   0   0  75   7   9   9
C |   0  96  96   0   0   7   7  73   7
G |   0   0   0  96  96   7  75   7  73
T |  96   0   0   0   0   7   7   7   7

scan!

home
updated Mon Jun 29 22:46:36 2026