6eko_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TYPE IIP RESTRICTION ENDONUCLEASE PFOI WITH COGNATE DNA
reference	Tamulaitiene et al. 'Nucleic 47 997 2019
source	Pseudomonas fluorescens
experiment	X-ray (resolution=2.28, R-factor=?)
reference complex	6eko_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6eko_A interface=100,105,108,109,188,190,191,192,238,246,256, mqkyrlyekdgspvqdfnrfvkgwldiefglkehqppkvfdtirdkyneaieavvlsgvaprtahkaalstltellfghdlakelsarldiqpigvggfRsahsQafAKnvgenfvnlmvyalacilkdnddvlvdkglpphlkkaltlsrecrikdtlreikipiegdlcvfsrsnhnaivisaatRlKEVfhigtmwalfsdvakdeyclnkwglkvesseslkdtmyvfatadmInkdgarsQgcdveretpRnliamdasffdyvfvskmgighvssdlslkygreslfhelgciidmieqkfdill > 6eko_B interface=100,105,108,109,188,190,191,192,238,246,256, mqkyrlyekdgspvqdfnrfvkgwldiefglkehqppkvfdtirdkyneaieavvlsgvaprtahkaalstltellfghdlakelsarldiqpigvggfRsahsQafAKnvgenfvnlmvyalacilkdnddvlvdkglpphlkkaltlsrecrikdtlreikipiegdlcvfsrsnhnaivisaatRlKEVfhigtmwalfsdvakdeyclnkwglkvesseslkdtmyvfatadmInkdgarsQgcdveretpRnliamdasffdyvfvskmgighvssdlslkygreslfhelgciidmieqkfdill
interface signature	RQAKRKEVIQR/RQAKRKEVIQR

Estimated binding specificities ?

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# IC=10.749 IC/col=1.075 n_of_columns=10

specificity:

A |  12  12   0   0   0   0   0   0  96  12
C |  64  10  96   0  96  96   0   0   0   0
G |  10  64   0   0   0   0  96  96   0  74
T |  10  10   0  96   0   0   0   0   0  10

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updated Sat Dec 16 09:40:39 2023