6eko_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TYPE IIP RESTRICTION ENDONUCLEASE PFOI WITH COGNATE DNA
reference	Tamulaitiene et al. 'Nucleic 47 997 2019
source	Pseudomonas fluorescens
experiment	X-ray (resolution=2.28, R-factor=?)
reference complex	6eko_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6eko_A interface=100,105,108,109,188,190,191,192,238,246,256, mqkyrlyekdgspvqdfnrfvkgwldiefglkehqppkvfdtirdkyneaieavvlsgvaprtahkaalstltellfghdlakelsarldiqpigvggfRsahsQafAKnvgenfvnlmvyalacilkdnddvlvdkglpphlkkaltlsrecrikdtlreikipiegdlcvfsrsnhnaivisaatRlKEVfhigtmwalfsdvakdeyclnkwglkvesseslkdtmyvfatadmInkdgarsQgcdveretpRnliamdasffdyvfvskmgighvssdlslkygreslfhelgciidmieqkfdill > 6eko_B interface=100,105,108,109,188,190,191,192,238,246,256, mqkyrlyekdgspvqdfnrfvkgwldiefglkehqppkvfdtirdkyneaieavvlsgvaprtahkaalstltellfghdlakelsarldiqpigvggfRsahsQafAKnvgenfvnlmvyalacilkdnddvlvdkglpphlkkaltlsrecrikdtlreikipiegdlcvfsrsnhnaivisaatRlKEVfhigtmwalfsdvakdeyclnkwglkvesseslkdtmyvfatadmInkdgarsQgcdveretpRnliamdasffdyvfvskmgighvssdlslkygreslfhelgciidmieqkfdill
interface signature	RQAKRKEVIQR/RQAKRKEVIQR

Estimated binding specificities ?

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# IC=10.749 IC/col=1.075 n_of_columns=10

specificity:

A |  10   0   0   0   0   0  96   0  10  10
C |  74   0  96  96   0   0   0   0  64  10
G |   0   0   0   0  96  96   0  96  10  64
T |  12  96   0   0   0   0   0   0  12  12

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updated Sat Dec 14 11:19:15 2024