6emz_AB : 3D-footprint complex

structure name	STRUCTURE OF THE TN1549 TRANSPOSON INTEGRASE (AA 82-397, R225K) IN COMPLEX WITH CIRCULAR INTERMEDIATE DNA (CI5-DNA)
reference	Rubio-Cosials et al. Cell 173 208 2018
source	Enterococcus faecalis
experiment	X-ray (resolution=2.79, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;
reference complex	6en1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6emz_A interface=21,22,28,66,67,70,73,74,76,80,91,174,235,236,237,244,292,295, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlKaafYtaiqddcirkNpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglkiselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsNitMtlnyyahatfdsaraemerla > 6emz_B interface=21,22,28,66,67,70,73,74,80,174,235,236,237,244,292, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlkaafYtaiqddcirknpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglkiselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsNitmtlnyyahatfdsaraemerla
interface signature	NTRKTNRSKYNTAVDRNM/NTRKTNRSYTAVDRN

Estimated binding specificities ?

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# IC=25.352 IC/col=0.975 n_of_columns=26

specificity:

A |   0  24   9  67   3  88  80   0   0   0   0   0  24  86   0  96  96  96  96   1   3   1   1  80  24   1
C |  96  24  13   9   5   3   7   0   0   0   0  96  24   5   0   0   0   0   0   4   3   1   4   5  24   3
G |   0  24   9   7   1   0   2   0   0   0   0   0  24   5   0   0   0   0   0   1   1   1   3   8  24  92
T |   0  24  65  13  87   5   7  96  96  96  96   0  24   0  96   0   0   0   0  90  89  93  88   3  24   0

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updated Tue Sep 10 12:26:28 2024