6emz_AB : 3D-footprint complex

structure name	STRUCTURE OF THE TN1549 TRANSPOSON INTEGRASE (AA 82-397, R225K) IN COMPLEX WITH CIRCULAR INTERMEDIATE DNA (CI5-DNA)
reference	Rubio-Cosials et al. Cell 173 208 2018
source	Enterococcus faecalis
experiment	X-ray (resolution=2.79, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;
reference complex	6en1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6emz_A interface=21,22,28,66,67,70,73,74,76,80,91,174,235,236,237,244,292,295, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlKaafYtaiqddcirkNpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglkiselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsNitMtlnyyahatfdsaraemerla > 6emz_B interface=21,22,28,66,67,70,73,74,80,174,235,236,237,244,292, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlkaafYtaiqddcirknpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglkiselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsNitmtlnyyahatfdsaraemerla
interface signature	NTRKTNRSKYNTAVDRNM/NTRKTNRSYTAVDRN

Estimated binding specificities ?

contact

# IC=25.431 IC/col=0.978 n_of_columns=26

specificity:

A |   4  24   5  86  90  90  90   0   0   0   0  96   3  24   0  96  96  96  96   3   3  89   3  69  24   0
C |  90  24   5   6   1   4   1   0   0   0   0   0   3  24   0   0   0   0   0   8   6   3   8   7  24   0
G |   1  24  15   1   4   1   1   0   0   0   0   0   0  24  96   0   0   0   0   3   5   3   3  13  24  96
T |   1  24  71   3   1   1   4  96  96  96  96   0  90  24   0   0   0   0   0  82  82   1  82   7  24   0

scan!

home
updated Wed Jul 30 16:47:32 2025