6emz_AB : 3D-footprint complex

structure name	STRUCTURE OF THE TN1549 TRANSPOSON INTEGRASE (AA 82-397, R225K) IN COMPLEX WITH CIRCULAR INTERMEDIATE DNA (CI5-DNA)
reference	Rubio-Cosials et al. Cell 173 208 2018
source	Enterococcus faecalis
experiment	X-ray (resolution=2.79, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;
reference complex	6en1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6emz_A interface=21,22,28,66,67,70,73,74,76,80,91,174,235,236,237,244,292,295, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlKaafYtaiqddcirkNpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglkiselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsNitMtlnyyahatfdsaraemerla > 6emz_B interface=21,22,28,66,67,70,73,74,80,174,235,236,237,244,292, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlkaafYtaiqddcirknpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglkiselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsNitmtlnyyahatfdsaraemerla
interface signature	NTRKTNRSKYNTAVDRNM/NTRKTNRSYTAVDRN

Estimated binding specificities ?

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# IC=25.680 IC/col=0.988 n_of_columns=26

specificity:

A |   1  24   5  88  90  88  90   0   0   0   0  96   1  24   0  96  96  96  96   8   1  84   6  65  24   0
C |  94  24   7   3   4   1   1   0   0   0   0   0   3  24   0   0   0   0   0   5   3   3   7   9  24   0
G |   0  24   2   4   1   1   4   0   0   0   0   0   1  24  96   0   0   0   0   5   5   4   1  15  24  96
T |   1  24  82   1   1   6   1  96  96  96  96   0  91  24   0   0   0   0   0  78  87   5  82   7  24   0

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updated Tue Jan 6 02:48:07 2026