6emz_AB : 3D-footprint complex

structure name	STRUCTURE OF THE TN1549 TRANSPOSON INTEGRASE (AA 82-397, R225K) IN COMPLEX WITH CIRCULAR INTERMEDIATE DNA (CI5-DNA)
reference	Rubio-Cosials et al. Cell 173 208 2018
source	Enterococcus faecalis
experiment	X-ray (resolution=2.79, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;
reference complex	6en1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6emz_A interface=21,22,28,66,67,70,73,74,76,80,91,174,235,236,237,244,292,295, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlKaafYtaiqddcirkNpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglkiselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsNitMtlnyyahatfdsaraemerla > 6emz_B interface=21,22,28,66,67,70,73,74,80,174,235,236,237,244,292, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlkaafYtaiqddcirknpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglkiselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsNitmtlnyyahatfdsaraemerla
interface signature	NTRKTNRSKYNTAVDRNM/NTRKTNRSYTAVDRN

Estimated binding specificities ?

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# IC=24.959 IC/col=0.960 n_of_columns=26

specificity:

A |   1  24  13  86  90  88  90   0   0   0   0  96   3  24   0  96  96  96  96   3   4  86   3  63  24   0
C |  90  24   9   3   1   3   1   0   0   0   0   0   4  24   0   0   0   0   0   5   1   3   5   9  24   0
G |   1  24   2   4   1   1   1   0   0   0   0   0   3  24  96   0   0   0   0  10   5   6   8  13  24  96
T |   4  24  72   3   4   4   4  96  96  96  96   0  86  24   0   0   0   0   0  78  86   1  80  11  24   0

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updated Thu Jun 25 13:54:36 2026