6en0_AB : 3D-footprint complex

structure name	STRUCTURE OF THE TN1549 TRANSPOSON INTEGRASE (AA 82-397) IN COMPLEX WITH CIRCULAR INTERMEDIATE DNA (CI5-DNA)
reference	Rubio-Cosials et al. Cell 173 208 2018
source	Enterococcus faecalis
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;
reference complex	6en1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6en0_A interface=21,22,28,66,67,70,73,74,76,80,91,174,228,229,230, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlKaafYtaiqddcirkNpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglriselcgltdkdldfenrviivshqllrnTgvgyyidvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgrlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsnitmtlnyyahatfdsaraemer > 6en0_B interface=20,21,27,63,64,67,70,73,77,168,229,230,231,238, mtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidslsdakewalrmkekglsyKTinNdkRslKaafYtaiqdrknpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglriselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsnitmtlnyyahatfdsaraemerla
interface signature	NTRKTNRSKYNTAVD/NTRKTNRKYTAVDR

Estimated binding specificities ?

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# IC=20.686 IC/col=0.940 n_of_columns=22

specificity:

A |   1  24   5  78   2  78  24   0   0   0   0   0  81   0  96  96  96  96   0  14  24   8
C |  93  24   5   8   2   5  24   0   0   0   0   0   5   0   0   0   0   0   0  14  24   5
G |   0  24   5   5   2   8  24   0   0   0   0  96   5   0   0   0   0   0   0  16  24   5
T |   2  24  81   5  90   5  24  96  96  96  96   0   5  96   0   0   0   0  96  52  24  78

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updated Tue Sep 10 12:26:52 2024