6en0_AB : 3D-footprint complex

structure name	STRUCTURE OF THE TN1549 TRANSPOSON INTEGRASE (AA 82-397) IN COMPLEX WITH CIRCULAR INTERMEDIATE DNA (CI5-DNA)
reference	Rubio-Cosials et al. Cell 173 208 2018
source	Enterococcus faecalis
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;
reference complex	6en1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6en0_A interface=21,22,28,66,67,70,73,74,76,80,91,174,228,229,230, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlKaafYtaiqddcirkNpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglriselcgltdkdldfenrviivshqllrnTgvgyyidvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgrlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsnitmtlnyyahatfdsaraemer > 6en0_B interface=20,21,27,63,64,67,70,73,77,168,229,230,231,238, mtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidslsdakewalrmkekglsyKTinNdkRslKaafYtaiqdrknpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglriselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsnitmtlnyyahatfdsaraemerla
interface signature	NTRKTNRSKYNTAVD/NTRKTNRKYTAVDR

Estimated binding specificities ?

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# IC=20.707 IC/col=0.941 n_of_columns=22

specificity:

A |  78  24  51  96   0   0   0   0  96   6   0  96  96  96  96  24   6  87   6  81  24   0
C |   6  24  15   0   0   0   0   0   0   6  96   0   0   0   0  24   6   3   6   6  24   0
G |   6  24  15   0   0   0   0   0   0   6   0   0   0   0   0  24   6   3   3   6  24  96
T |   6  24  15   0  96  96  96  96   0  78   0   0   0   0   0  24  78   3  81   3  24   0

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updated Sat Dec 14 11:19:56 2024