6en1_AB : 3D-footprint complex

structure name	STRUCTURE OF THE TN1549 TRANSPOSON INTEGRASE (AA 82-397, R225K) IN COMPLEX WITH A CIRCULAR INTERMEDIATE DNA (CI6A-DNA)
reference	Rubio-Cosials et al. Cell 173 208 2018
source	Enterococcus faecalis
experiment	X-ray (resolution=2.67, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;
reference complex	6en1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6en1_A interface=21,22,28,66,67,70,73,74,174,235,236,237,244,292,295, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlkaafytaiqddcirknpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglkiselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsNitMtlnyyahatfdsaraemerla > 6en1_B interface=21,22,28,66,67,70,73,74,80,174,235,236,237,244,295, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlkaafYtaiqddcirknpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglkiselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsnitMtlnyyahatfdsaraemerla
interface signature	NTRKTNRSTAVDRNM/NTRKTNRSYTAVDRM

Estimated binding specificities ?

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# IC=22.035 IC/col=0.918 n_of_columns=24

specificity:

A |   4  24   5  24   5  87  90   0   0   0   0   0  96  96  96  96  96   5   2   9  24  79  24   0
C |  90  24   7  24   5   2   2   0   0   1   0   0   0   0   0   0   0   2   5   8  24   5  24   2
G |   2  24   5  24   7   5   2   0   0   2   0  96   0   0   0   0   0   2   2   8  24   7  24  93
T |   0  24  79  24  79   2   2  96  96  93  96   0   0   0   0   0   0  87  87  71  24   5  24   1

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updated Tue Sep 10 12:27:13 2024