6en1_AB : 3D-footprint complex

structure name	STRUCTURE OF THE TN1549 TRANSPOSON INTEGRASE (AA 82-397, R225K) IN COMPLEX WITH A CIRCULAR INTERMEDIATE DNA (CI6A-DNA)
reference	Rubio-Cosials et al. Cell 173 208 2018
source	Enterococcus faecalis
experiment	X-ray (resolution=2.67, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;
reference complex	6en1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6en1_A interface=21,22,28,70,73,74,174,235,236,237,244,292,295, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyktinNdkRSlkaafytaiqddcirknpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglkiselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsNitMtlnyyahatfdsaraemerla > 6en1_B interface=21,22,28,66,67,70,73,74,80,174,235,236,237,244,295, smtvcqlyakqirhrgnvkhNTklgreRlmrileqdrlgscpidsvklsdakewalrmkekglsyKTinNdkRSlkaafYtaiqddcirknpfdfqlsdvldddtepkvpltpaqeesflsfiqgdkvyqkhydaivillgtglkiselcgltdkdldfenrviivshqllrnTgvgyyidepktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtAVDyggmfgRlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsnitMtlnyyahatfdsaraemerla
interface signature	NTRNRSTAVDRNM/NTRKTNRSYTAVDRM

Estimated binding specificities ?

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# IC=22.491 IC/col=0.937 n_of_columns=24

specificity:

A |   2  24   2  24  71  89  90   0   0   2   0   0   0  96  96  96  96   2   2  89  24  82  24   2
C |  90  24   4  24  11   2   2   0   0   2   0   0  96   0   0   0   0   2   2   3  24   4  24   2
G |   2  24   8  24   8   3   2   0   0   2   0   0   0   0   0   0   0   2   3   2  24   2  24  90
T |   2  24  82  24   6   2   2  96  96  90  96  96   0   0   0   0   0  90  89   2  24   8  24   2

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updated Sat Dec 14 11:20:17 2024