6f42_UVW : 3D-footprint complex

structure name	RNA POLYMERASE III CLOSED COMPLEX CC1.
experiment	NMR
structural superfamily	TATA-box binding protein-like;"Winged helix" DNA-binding domain;Homeodomain-like;Cyclin-like;Zinc beta-ribbon;
reference complex	5oqj_O 6cnb_O 6eu0_V 6eu0_Z
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6f42_U interface=9,11,39,64,99,101,130,131,145,147,153,155, sgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttalifasgkmvvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkm > 6f42_V interface=85,122,220, pvcknchgteferdlsnanndlvckacgvvsednpivselesreatlnnarrklravsyalhipeyitdaafqwyklalannfvQgrrsqnviasclyvacrkekthhmlidfssrlqvsvYsigatflkmvkklhitelpladpslfiqhfaekldladkkikvvkdavklaqrmskdwmfegrrpagiagacillacrmnnlrrthteivavshvaeEtlqqrlnefkntkaaklsvqkfrendvedgearppsfvknrkkecprnlhllpttdtylskvsddpdnledvddeelnahllneeasklkeriwiglnadflleqeskrlkq > 6f42_W interface=28,62, ckpnfpigqisenfekskmakkaklekRrhlrelrmrarqekvdenpfanlynygsygrgsYtdpwtveemikfykalsmwgtdfnlisqlypyrsrkqvkakfvneekkrpilielalrsklppnfdeycceikknigtvadfneklielqnehkhhmkeieea
interface signature	NVFTNVFPLFVT/QYE/RY

Estimated binding specificities ?

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# IC=8.044 IC/col=0.670 n_of_columns=12

specificity:

A |   9  24   0   0  69   0  96  24  24  24   0   9
C |   9  24   0   0   9   0   0  24  24  24   0  69
G |  11  24   0   0   9   0   0  24  24  24  96   9
T |  67  24  96  96   9  96   0  24  24  24   0   9

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updated Tue Sep 10 13:04:32 2024