6f59_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HUMAN BRACHYURY (T) G177D VARIANT IN COMPLEX WITH DNA
reference	Burgess-Brown et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=2.15, R-factor=?)
structural superfamily	p53-like transcription factors;
reference complex	6f59_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6f59_A interface=29,150,151,167,171, elrvgleeselwlrfkeltnemivtkngRrmfpvlkvnvsgldpnamysflldfvaadnhrwkyvngewvpqapscvyihpdspnfgahwmkapvsfskvkltnklngggqimlnslhkyeprihivrvgdpqrmitshcfpetqfiavTAyqneeitalkikynpFakaFldakers > 6f59_B interface=30,157,158,174,177,178, gelrvgleeselwlrfkeltnemivtkngRrmfpvlkvnvsgldpnamysflldfvaadnhrwkyvngewvpggkpepqapscvyihpdspnfgahwmkapvsfskvkltnklngggqimlnslhkyeprihivrvgdpqrmitshcfpetqfiavTAyqneeitalkikynpFakAFldakers
interface signature	RTAFF/RTAFAF

Estimated binding specificities ?

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# IC=8.926 IC/col=0.496 n_of_columns=18

specificity:

A |   0  24  24  24   0  96   3   9  24  63  24  12   3   0  24  24  24  78
C |   0  24  24  24  96   0  84  60  24  12  24  15   0   0  24  24  24   3
G |   3  24  24  24   0   0   6  12  24  12  24  57   0  96  24  24  24   3
T |  93  24  24  24   0   0   3  15  24   9  24  12  93   0  24  24  24  12

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updated Tue Sep 10 13:07:11 2024