6fb8_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE I-CREI HOMING ENDONUCLEASE D75N VARIANT IN COMPLEX WITH AN ALTERED VERSION OF ITS TARGET DNA AT 5NNN REGION IN THE PRESENCE OF MAGNESIUM
reference	Molina et al. 'Sci 8 10286 2018
source	Chlamydomonas reinhardtii
experiment	X-ray (resolution=2.45, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fb8_A interface=21,23,25,27,29,31,32,37,43,45,67,69,72,74,138,139, ntkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlsltfQvTqktqrrwfldklvdeigvgyvRdRgsVsNyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravldaa > 6fb8_B interface=21,23,25,27,29,31,32,37,39,43,45,67,69,72,74,138,139, ntkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlSltfQvTqktqrrwfldklvdeigvgyvRdRgsVsNyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravlda
interface signature	SIQKNSYQQTRRVNKT/SIQKNSYQSQTRRVNKT

Estimated binding specificities ?

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# IC=27.224 IC/col=1.134 n_of_columns=24

specificity:

A |   0   2  96  96  64  96   1   0   4   2  90   1  93  10   0   0  96   2   0   0   0   0   4  96
C |   0  92   0   0   5   0  85   0   2  85   0   2   0  72   0  93   0   0   0  10   0   0   5   0
G |   0   0   0   0  20   0   5  96   5   5   6   0   3   5  96   0   0  93   0   1   0   0  85   0
T |  96   2   0   0   7   0   5   0  85   4   0  93   0   9   0   3   0   1  96  85  96  96   2   0

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updated Sat Dec 14 12:05:48 2024