6fbq_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO THE HUMAN MEP DR1 RESPONSE ELEMENT, PH 7.0
reference	Poussin-Courmontagne et al. 'Mol. 481 44 2019
source	Homo sapiens
experiment	X-ray (resolution=1.60, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	6fbq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fbq_A interface=14,24,27,31,32,80, ftkhicaicgdrsSgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeR > 6fbq_B interface=23,26,30,31,79, tkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeRqr
interface signature	SEKKRR/EKKRR

Estimated binding specificities ?

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# IC=13.758 IC/col=0.983 n_of_columns=14

specificity:

A |  11   0  84  96   0   6  24   4   0  86   0   0   0  86
C |   9   0   4   0  96  14  24   7   0   4  96  96  91   4
G |   4  96   4   0   0   4  24   4  96   4   0   0   0   0
T |  72   0   4   0   0  72  24  81   0   2   0   0   5   6

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updated Tue Jan 6 03:42:08 2026