6fbq_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO THE HUMAN MEP DR1 RESPONSE ELEMENT, PH 7.0
reference	Poussin-Courmontagne et al. 'Mol. 481 44 2019
source	Homo sapiens
experiment	X-ray (resolution=1.60, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	6fbq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fbq_A interface=14,24,27,31,32,80, ftkhicaicgdrsSgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeR > 6fbq_B interface=23,26,30,31,79, tkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeRqr
interface signature	SEKKRR/EKKRR

Estimated binding specificities ?

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# IC=13.651 IC/col=0.975 n_of_columns=14

specificity:

A |   5   0  85  96   0   1  24  11   0  75   0   0   0  80
C |   5   0   6   0  96  10  24   5   0  10  96  96  96   5
G |   5  96   0   0   0  10  24   5  96   5   0   0   0   5
T |  81   0   5   0   0  75  24  75   0   6   0   0   0   6

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updated Tue Sep 10 13:08:13 2024