6fbq_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO THE HUMAN MEP DR1 RESPONSE ELEMENT, PH 7.0
reference	Poussin-Courmontagne et al. 'Mol. 481 44 2019
source	Homo sapiens
experiment	X-ray (resolution=1.60, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fbq_A interface=14,24,27,31,32,80, ftkhicaicgdrsSgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeR > 6fbq_B interface=23,26,30,31,79, tkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeRqr
interface signature	SEKKRR/EKKRR

Estimated binding specificities ?

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# IC=13.746 IC/col=0.982 n_of_columns=14

specificity:

A |  11   0  83  96   0   9  24   4   0  76   0   0   0  91
C |   9   0   4   0  96  19  24   7   0   7  96  96  96   0
G |   4  96   9   0   0   4  24   4  96   9   0   0   0   5
T |  72   0   0   0   0  64  24  81   0   4   0   0   0   0

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updated Sat Dec 14 12:06:13 2024