6fix_ABDE : 3D-footprint complex

structure name	ANTITOXIN GRAA IN COMPLEX WITH ITS OPERATOR
reference	Talavera et al.
source	Pseudomonas putida
experiment	X-ray (resolution=3.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	6fix_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fix_A interface=25,34,35,36,37,39, ngmrpihpgeilreefqkemgfsaAalaralgvATPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv > 6fix_B interface=38,39,40,42, hlkngmrpihpgeilreefqkemgfsaaalaralgvaTPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlva > 6fix_D interface=25,34,35,36,37,39, ngmrpihpgeilreefqkemgfsaAalaralgvATPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv > 6fix_E interface=32,33,34,36, rpihpgeilreefqkemgfsaaalaralgvaTPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv
interface signature	AATPTN/TPTN/AATPTN/TPTN

Estimated binding specificities ?

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# IC=11.059 IC/col=0.582 n_of_columns=19

specificity:

A |  73   3  24  24  24   3  62  96  24  24   0   0  96  84  24  24  24   2   0
C |  17  84  24  24  24   3  11   0  24  24   0   0   0   3  24  24  24   3   3
G |   3   6  24  24  24   3   7   0  24  24   0   0   0   6  24  24  24   3   3
T |   3   3  24  24  24  87  16   0  24  24  96  96   0   3  24  24  24  88  90

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updated Tue Jan 6 03:42:25 2026