6fix_ABDE : 3D-footprint complex

structure name	ANTITOXIN GRAA IN COMPLEX WITH ITS OPERATOR
reference	Talavera et al.
source	Pseudomonas putida
experiment	X-ray (resolution=3.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	6fix_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fix_A interface=25,34,35,36,37,39, ngmrpihpgeilreefqkemgfsaAalaralgvATPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv > 6fix_B interface=38,39,40, hlkngmrpihpgeilreefqkemgfsaaalaralgvaTPTvnnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlva > 6fix_D interface=25,34,35,36,37,39, ngmrpihpgeilreefqkemgfsaAalaralgvATPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv > 6fix_E interface=32,33,34,36, rpihpgeilreefqkemgfsaaalaralgvaTPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv
interface signature	AATPTN/TPT/AATPTN/TPTN

Estimated binding specificities ?

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# IC=11.175 IC/col=0.621 n_of_columns=18

specificity:

A |  84   0  24  24   4   0  96  96  24  24   0  17  91  24  24  24   5   5
C |   4   5  24  24   6   0   0   0  24  24   0  13   0  24  24  24   4   0
G |   4   0  24  24   4   0   0   0  24  24   0  10   1  24  24  24  87  17
T |   4  91  24  24  82  96   0   0  24  24  96  56   4  24  24  24   0  74

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updated Wed Jul 30 17:34:53 2025