6fix_ABDE : 3D-footprint complex

structure name	ANTITOXIN GRAA IN COMPLEX WITH ITS OPERATOR
reference	Talavera et al.
source	Pseudomonas putida
experiment	X-ray (resolution=3.80, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fix_A interface=25,34,35,36,37,39, ngmrpihpgeilreefqkemgfsaAalaralgvATPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv > 6fix_B interface=38,39,40, hlkngmrpihpgeilreefqkemgfsaaalaralgvaTPTvnnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlva > 6fix_D interface=25,34,35,36,37,39, ngmrpihpgeilreefqkemgfsaAalaralgvATPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv > 6fix_E interface=32,33,34,36, rpihpgeilreefqkemgfsaaalaralgvaTPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv
interface signature	AATPTN/TPT/AATPTN/TPTN

Estimated binding specificities ?

readout + contact

# IC=10.915 IC/col=0.606 n_of_columns=18

specificity:

A |  85   5  24  24   5   0  96  96  24  24   0  10  87  24  24  24   3   3
C |   5   3  24  24   3   0   0   0  24  24   0   6   3  24  24  24   5   3
G |   3   3  24  24   3   0   0   0  24  24   0  15   3  24  24  24  85  15
T |   3  85  24  24  85  96   0   0  24  24  96  65   3  24  24  24   3  75

scan!

home
updated Sat Dec 14 12:06:36 2024