6fix_ABDE : 3D-footprint complex

structure name	ANTITOXIN GRAA IN COMPLEX WITH ITS OPERATOR
reference	Talavera et al.
source	Pseudomonas putida
experiment	X-ray (resolution=3.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	6fix_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fix_A interface=25,34,35,36,37,39, ngmrpihpgeilreefqkemgfsaAalaralgvATPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv > 6fix_B interface=38,39,40, hlkngmrpihpgeilreefqkemgfsaaalaralgvaTPTvnnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlva > 6fix_D interface=25,34,35,36,37,39, ngmrpihpgeilreefqkemgfsaAalaralgvATPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv > 6fix_E interface=32,33,34,36, rpihpgeilreefqkemgfsaaalaralgvaTPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv
interface signature	AATPTN/TPT/AATPTN/TPTN

Estimated binding specificities ?

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# IC=10.910 IC/col=0.606 n_of_columns=18

specificity:

A |  85   5  24  24   3   0  96  96  24  24   0   6  85  24  24  24   3   3
C |   3   3  24  24   3   0   0   0  24  24   0  12   3  24  24  24   5   3
G |   5   3  24  24   3   0   0   0  24  24   0  13   5  24  24  24  85  15
T |   3  85  24  24  87  96   0   0  24  24  96  65   3  24  24  24   3  75

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updated Tue Sep 10 13:08:28 2024