6fix_D : 3D-footprint complex

structure name	ANTITOXIN GRAA IN COMPLEX WITH ITS OPERATOR (XRE family transcriptional regulator)
reference	Talavera et al.
source	Pseudomonas putida
experiment	X-ray (resolution=3.80, R-factor=0.248)
structural superfamily	lambda repressor-like DNA-binding domains;
sequence family	Helixturnhelix;
multimeric complexes	6fix_ABDE
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fix_D interface=25,34,35,36,37,39, ngmrpihpgeilreefqkemgfsaAalaralgvATPTvNnilrerggvsadmalrlsicldttpefwlnlqtafdlrtaeqqhgdeiigsvqrlv
interface signature	AATPTN

Estimated binding specificities ?

readout + contact

# IC=3.101 IC/col=0.775 n_of_columns=4

specificity:

A |  13   0  96  54
C |  16   0   0  16
G |  13   0   0  13
T |  54  96   0  13

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --ATATTTPTTTNT----------   L                       +-6fix_D    
                                               +-----4 
  ----SG--PA--------RC----                     !     ! +7csw_B    
                                   +-----------5     +-1 
  --RTTT--AT--STRG--TT----   L     !           !       +6chv_D    
                                   !           ! 
  RT------RG----NT--ETRTYA   L   +-6           +-------7f9h_B    
                                 ! ! 
  --SGAAKGSGYGST--QG------   L   ! !                  +3zkc_A    
                                 ! +------------------3 
  --AT--QAAT--SA----------     --7                    ! +4z5h_A    
                                 !                    +-2 
  --STKCQAAT--SA----------   L   !                      +3dnv_B    
                                 ! 
  ----SGKGSCQTSTRG--------   L   +--------------------6w1a_A

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updated Tue Dec 19 12:49:42 2023