6fqp_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TALE HOMEOBOX DOMAIN TRANSCRIPTION FACTOR TGIF1 WITH ITS CONSENSUS DNA
reference	Macias et al. 'Nucleic 46 9220 2018
source	Homo sapiens
experiment	X-ray (resolution=2.42, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	6fqp_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fqp_A interface=1,46,49,50,53,54, RgnlpkesvqilrdwlyehrynaypseqekallsqqthlstlqvcNwfINarRRllpdmlrkdgkdp > 6fqp_B interface=2,4,50,53,54,57,58, kRrRrgnlpkesvqilrdwlyehrynaypseqekallsqqthlstlqvcNwfINarRRllpdmlrk
interface signature	RNINRR/RRNINRR

Estimated binding specificities ?

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# IC=12.931 IC/col=1.078 n_of_columns=12

specificity:

A |   0   0  96   0  96  10   8   8   0   0   0  96
C |   0   0   0  96   0   8  63  17   0   0  96   0
G |   0  96   0   0   0  61  17  19  96   0   0   0
T |  96   0   0   0   0  17   8  52   0  96   0   0

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updated Tue Sep 10 13:25:40 2024