6fqq_DE : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TALE HOMEOBOX DOMAIN TRANSCRIPTION FACTOR TGIF1 DOUBLE ALANINE MUTANT BOUND TO ITS CONSENSUS DNA
reference	Macias et al. 'Nucleic 46 9220 2018
source	Homo sapiens
experiment	X-ray (resolution=3.25, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	6fqq_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fqq_D interface=47,50,51,54,55, aagnlpkesvqilrdwlyehrynaypseqekallsqqthlstlqvcNwfINarRRllpdmlrk > 6fqq_E interface=45,48,49,52,53, gnlpkesvqilrdwlyehrynaypseqekallsqqthlstlqvcNwfINarRRllpdmlrk
interface signature	NINRR/NINRR

Estimated binding specificities ?

readout + contact

# IC=11.925 IC/col=0.994 n_of_columns=12

specificity:

A |   4   0  75  21  96   8   8   0   0   0   0  78
C |   4   0  21  61   0   8  69   0   0   0  96   4
G |   0  96   0   8   0  72   8   0  96   0   0   4
T |  88   0   0   6   0   8  11  96   0  96   0  10

scan!

home
updated Tue Sep 10 13:25:46 2024